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Selecting and Searching

Marcus Fedarko edited this page Oct 20, 2018 · 1 revision

Selected Elements

As you select elements (nodes, edges, node groups/clusters) in the graph, they'll show up here. You can click each of these sections' headers to toggle a table showing all selected elements of a given type, as well as these elements' various properties.

Note that, for LastGraph files, statistics are generated from the DNA sequences provided in the file. Since these sequences are at an offset (see Velvet's PDF manual here and Bandage's wiki here for more details), this may cause things like the GC content to be slightly off.

Also note that the formula used for calculating depth in LastGraph files is $O_COV_SHORT1 / $COV_SHORT1 -- the $COV_SHORT2 and $O_COV_SHORT2 values are not taken into account by MetagenomeScope (mostly because I don't know how you'd go about using them). (These values' names are based on the Velvet manual.)

Searching

Not currently supported in the decomposition modes.

You can search for nodes (using either ID or label) using this field.