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Remove leftover scripts after ref-index.so removal
The permuted index had been removed in commit 4ae29d8 ("Remove secondary index from reference manual. Remove Warnings.", 2022-10-28) and further cleaned up in commit ad1d6f3 ("Remove vestigal ref_index.so (sierrafoxtrot#22)", 2022-11-04). See also issue sierrafoxtrot#21.
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