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nf-co.re Public
Forked from nf-core/websiteFiles for the main nf-core website >>>
Astro MIT License UpdatedJan 24, 2025 -
rnaseq Public
Forked from nf-core/rnaseqRNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control
Nextflow MIT License UpdatedJan 24, 2025 -
actions-runners Public
Forked from nf-core/actions-runnersInstructions and scripts for custom GitHub Actions runners
Shell MIT License UpdatedJan 23, 2025 -
tools Public
Forked from nf-core/toolsPython package with helper tools for the nf-core community.
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astropub-md Public
Forked from astro-community/mdRender any Markdown content in Astro, optionally integrating with any existing configuration.
JavaScript UpdatedJan 14, 2025 -
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detect-nf-test-changes Public
Forked from adamrtalbot/detect-nf-test-changesIdentify changes in Nextflow repo for CI testing
Python MIT License UpdatedNov 26, 2024 -
modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedNov 25, 2024 -
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deepmodeloptim Public
Forked from nf-core/deepmodeloptimStochastic Testing and Input Manipulation for Unbiased Learning Systems
Nextflow MIT License UpdatedNov 7, 2024 -
repo2rocrate Public
Forked from crs4/repo2rocrateGenerate a Workflow RO-Crate from a best-practice workflow repository
Python Apache License 2.0 UpdatedNov 5, 2024 -
hackathon Public
Forked from nf-core/hackathonAll about the nf-core hackathons
Nextflow MIT License UpdatedOct 28, 2024 -
demo Public
Forked from nf-core/demonf-core/demo is a simple nf-core style bioinformatics pipeline for workshops and demos.
Nextflow MIT License UpdatedOct 17, 2024 -
genomeassembler Public
Forked from nf-core/genomeassemblerNextflow MIT License UpdatedOct 11, 2024 -
createtaxdb Public
Forked from nf-core/createtaxdbParallelised and automated construction of metagenomic classifier databases of different tools
Nextflow MIT License UpdatedOct 10, 2024 -
smrnaseq Public
Forked from nf-core/smrnaseqA small-RNA sequencing analysis pipeline
Nextflow MIT License UpdatedOct 8, 2024 -
mag Public
Forked from nf-core/magAssembly and binning of metagenomes
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mcmicro Public
Forked from nf-core/mcmicroAn end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
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molkart Public
Forked from nf-core/molkartA pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
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ro-crate-py Public
Forked from ResearchObject/ro-crate-pyPython library for RO-Crate
Jupyter Notebook Apache License 2.0 UpdatedAug 2, 2024 -
crisprseq Public
Forked from nf-core/crisprseqA pipeline for the analysis of CRISPR edited next generation sequencing (NGS) data. CRISPR gene knockouts (KO), CRISPR knock-ins (KI), base editing (BE) and prime editing (PE) experiments
Nextflow MIT License UpdatedJul 9, 2024 -
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configs Public
Forked from nf-core/configsConfig files used to define parameters specific to compute environments at different Institutions
Nextflow MIT License UpdatedMay 7, 2024 -
plessy_pairwiseGenomeComparison Public
Forked from oist/plessy_pairwiseGenomeComparisonDraft workflow for pairwise genome comparison
Nextflow UpdatedApr 29, 2024 -
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tree-sitter-nextflow Public
Forked from edmundmiller/tree-sitter-nextflowNextflow UpdatedMar 10, 2024 -