This directory contains all of the code and data used in Glasenapp and Pogson (2023). The scripts/ directory contains the bash, python, and R scripts used to generate the results. The data/ directory contains the input and output data associated with the scripts. There are individual README files for each nested folder.

The raw sequencing reads used to produce all results were deposited in the NCBI Sequence Read Archive under BioProject PRJNA391452.

The hard-filtered genotype calls for all nine strongylocentrotid species are included in the file filtered_genotype_calls_pf.g.vcf.gz