update to pyiron/actions v3.3.1 #71
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| name: Run workflow | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| types: [labeled, opened, synchronize, reopened] | |
| workflow_call: | |
| permissions: | |
| contents: write | |
| pull-requests: write | |
| jobs: | |
| run_workflow: | |
| if: | | |
| github.event_name == 'push' || | |
| (github.event_name == 'pull_request' && contains(github.event.pull_request.labels.*.name, 'run_workflow') && | |
| github.event.actor.login != 'github-actions' && | |
| github.event.actor.login != 'ci') | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{ github.event.pull_request.head.ref }} | |
| - name: Setup environment | |
| uses: pyiron/actions/[email protected] | |
| with: | |
| python-version: '3.11' | |
| env-files: .ci_support/environment.yml | |
| env-path: 'cached-miniforge/my-env' #/home/runner/miniconda3/envs/my-env | |
| local-code-directory: '' | |
| use-cache: 'false' | |
| miniforge-variant: miniforge | |
| miniforge-channels: conda-forge | |
| pip-install-versioneer: 'false' | |
| no-build-isolation: 'false' | |
| - name: Add papermill and jupyter | |
| shell: bash -l {0} | |
| run: mamba install -n my-env jupyter papermill | |
| - name: Execute workflow | |
| shell: bash -l {0} | |
| run: | | |
| papermill workflow.ipynb workflow-out.ipynb -k python3 | |
| mkdir -p ci_output | |
| date +%s > ci_output/timestamp.txt | |
| mv workflow-out.ipynb ci_output/ | |
| - name: Upload CI output files as artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ci_output | |
| path: ./ci_output/* | |
| - name: push ./ci_output | |
| shell: bash -l {0} | |
| run: | | |
| git config user.name 'ci' | |
| git config user.email '[email protected]' | |
| git add ci_output/* | |
| git commit -m "push updated notebook to './ci_output/workflow-out.ipynb'" | |
| git push | |
| - name: Post a comment linking the executed notebook | |
| uses: actions/github-script@v7 | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| script: | | |
| const issueNumber = context.payload.pull_request.number; | |
| const branchName = context.payload.pull_request.head.ref; | |
| const repoUrl = `https://github.com/${context.repo.owner}/${context.repo.repo}/blob/${branchName}`; | |
| const relativeTarget = `ci_output/workflow-out.ipynb`; | |
| const comment = `:robot: Here is the [workflow output notebook on this branch](${repoUrl}/${relativeTarget})`; | |
| await github.rest.issues.createComment({ | |
| owner: context.repo.owner, | |
| repo: context.repo.repo, | |
| issue_number: issueNumber, | |
| body: comment, | |
| }); |