Revert "Merge branch 'master' into master"

This reverts commit 563e243, reversing changes made to e0168f9.
medbioinf · Jul 30, 2021 · d72a729 · d72a729
1 parent 563e243
commit d72a729
Show file tree

Hide file tree

Showing 34 changed files with 202 additions and 550 deletions.
diff --git a/.github/workflows/maven.yml b/.github/workflows/maven.yml
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
diff --git a/.m2/settings.xml b/.m2/settings.xml
diff --git a/assembly.xml b/assembly.xml
@@ -1,28 +1,38 @@
-<assembly>
-    <id>pia-deployment</id>
-
-    <formats>
-        <format>zip</format>
-    </formats>
-
-    <includeBaseDirectory>false</includeBaseDirectory>
-
-    <fileSets>
-        <fileSet>
-            <directory>${project.basedir}/target</directory>
-            <includes>
-                <include>${artifact.artifactId}-${artifact.baseVersion}.jar</include>
-            </includes>
-            <outputDirectory></outputDirectory>
-        </fileSet>
-
-        <fileSet>
-            <directory>${project.basedir}</directory>
-            <includes>
-                <include>README.md</include>
-                <include>LICENSE</include>
-            </includes>
-            <outputDirectory></outputDirectory>
-        </fileSet>
-    </fileSets>
+<assembly>
+    <id>pia-deployment</id>
+
+    <formats>
+        <format>zip</format>
+    </formats>
+
+    <includeBaseDirectory>false</includeBaseDirectory>
+
+    <dependencySets>
+        <dependencySet>
+            <useProjectArtifact>false</useProjectArtifact>
+            <outputDirectory>lib</outputDirectory>
+            <unpack>false</unpack>
+            <scope>runtime</scope>
+            <outputFileNameMapping>${artifact.artifactId}-${artifact.baseVersion}.${artifact.extension}</outputFileNameMapping>
+        </dependencySet>
+    </dependencySets>
+
+    <fileSets>
+        <fileSet>
+            <directory>${project.basedir}/target</directory>
+            <includes>
+                <include>${artifact.artifactId}-${artifact.baseVersion}.jar</include>
+            </includes>
+            <outputDirectory></outputDirectory>
+        </fileSet>
+
+        <fileSet>
+            <directory>${project.basedir}</directory>
+            <includes>
+                <include>README.md</include>
+                <include>LICENSE</include>
+            </includes>
+            <outputDirectory></outputDirectory>
+        </fileSet>
+    </fileSets>
 </assembly>
diff --git a/libs/batik/batik-all/1.6/batik-all-1.6.jar b/libs/batik/batik-all/1.6/batik-all-1.6.jar
diff --git a/libs/batik/batik-all/1.6/batik-all-1.6.pom b/libs/batik/batik-all/1.6/batik-all-1.6.pom
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd" xmlns="http://maven.apache.org/POM/4.0.0"
+    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
+  <modelVersion>4.0.0</modelVersion>
+  <groupId>batik</groupId>
+  <artifactId>batik-all</artifactId>
+  <version>1.6</version>
+  <description>POM was created from install:install-file</description>
+</project>
diff --git a/libs/batik/batik-all/maven-metadata-local.xml b/libs/batik/batik-all/maven-metadata-local.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<metadata>
+  <groupId>batik</groupId>
+  <artifactId>batik-all</artifactId>
+  <versioning>
+    <release>1.6</release>
+    <versions>
+      <version>1.6</version>
+    </versions>
+    <lastUpdated>20190628143241</lastUpdated>
+  </versioning>
+</metadata>
diff --git a/libs/batik/pdf-transcoder/1.0/pdf-transcoder-1.0.jar b/libs/batik/pdf-transcoder/1.0/pdf-transcoder-1.0.jar
diff --git a/libs/batik/pdf-transcoder/1.0/pdf-transcoder-1.0.pom b/libs/batik/pdf-transcoder/1.0/pdf-transcoder-1.0.pom
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd" xmlns="http://maven.apache.org/POM/4.0.0"
+    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
+  <modelVersion>4.0.0</modelVersion>
+  <groupId>batik</groupId>
+  <artifactId>pdf-transcoder</artifactId>
+  <version>1.0</version>
+  <description>POM was created from install:install-file</description>
+</project>
diff --git a/libs/batik/pdf-transcoder/maven-metadata-local.xml b/libs/batik/pdf-transcoder/maven-metadata-local.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<metadata>
+  <groupId>batik</groupId>
+  <artifactId>pdf-transcoder</artifactId>
+  <versioning>
+    <release>1.0</release>
+    <versions>
+      <version>1.0</version>
+    </versions>
+    <lastUpdated>20190628143519</lastUpdated>
+  </versioning>
+</metadata>
diff --git a/libs/de/mpc/BaseLib/0.0.1-SNAPSHOT/BaseLib-0.0.1-SNAPSHOT.jar b/libs/de/mpc/BaseLib/0.0.1-SNAPSHOT/BaseLib-0.0.1-SNAPSHOT.jar
diff --git a/libs/de/mpc/BaseLib/0.0.1-SNAPSHOT/BaseLib-0.0.1-SNAPSHOT.pom b/libs/de/mpc/BaseLib/0.0.1-SNAPSHOT/BaseLib-0.0.1-SNAPSHOT.pom
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd" xmlns="http://maven.apache.org/POM/4.0.0"
+    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
+  <modelVersion>4.0.0</modelVersion>
+  <groupId>de.mpc</groupId>
+  <artifactId>BaseLib</artifactId>
+  <version>0.0.1-SNAPSHOT</version>
+  <description>POM was created from install:install-file</description>
+</project>
diff --git a/libs/de/mpc/BaseLib/maven-metadata-local.xml b/libs/de/mpc/BaseLib/maven-metadata-local.xml
@@ -0,0 +1,11 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<metadata>
+  <groupId>de.mpc</groupId>
+  <artifactId>BaseLib</artifactId>
+  <versioning>
+    <versions>
+      <version>0.0.1-SNAPSHOT</version>
+    </versions>
+    <lastUpdated>20150903080550</lastUpdated>
+  </versioning>
+</metadata>
diff --git a/libs/de/mpc/CvtBaseLib/0.0.1-SNAPSHOT/CvtBaseLib-0.0.1-SNAPSHOT.jar b/libs/de/mpc/CvtBaseLib/0.0.1-SNAPSHOT/CvtBaseLib-0.0.1-SNAPSHOT.jar
diff --git a/libs/de/mpc/CvtBaseLib/0.0.1-SNAPSHOT/CvtBaseLib-0.0.1-SNAPSHOT.pom b/libs/de/mpc/CvtBaseLib/0.0.1-SNAPSHOT/CvtBaseLib-0.0.1-SNAPSHOT.pom
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd" xmlns="http://maven.apache.org/POM/4.0.0"
+    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
+  <modelVersion>4.0.0</modelVersion>
+  <groupId>de.mpc</groupId>
+  <artifactId>CvtBaseLib</artifactId>
+  <version>0.0.1-SNAPSHOT</version>
+  <description>POM was created from install:install-file</description>
+</project>
diff --git a/libs/de/mpc/CvtBaseLib/maven-metadata-local.xml b/libs/de/mpc/CvtBaseLib/maven-metadata-local.xml
@@ -0,0 +1,11 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<metadata>
+  <groupId>de.mpc</groupId>
+  <artifactId>CvtBaseLib</artifactId>
+  <versioning>
+    <versions>
+      <version>0.0.1-SNAPSHOT</version>
+    </versions>
+    <lastUpdated>20150903080745</lastUpdated>
+  </versioning>
+</metadata>
diff --git a/libs/de/mpc/PDLibrary/0.0.1-SNAPSHOT/PDLibrary-0.0.1-SNAPSHOT.jar b/libs/de/mpc/PDLibrary/0.0.1-SNAPSHOT/PDLibrary-0.0.1-SNAPSHOT.jar
diff --git a/libs/de/mpc/PDLibrary/0.0.1-SNAPSHOT/PDLibrary-0.0.1-SNAPSHOT.pom b/libs/de/mpc/PDLibrary/0.0.1-SNAPSHOT/PDLibrary-0.0.1-SNAPSHOT.pom
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd" xmlns="http://maven.apache.org/POM/4.0.0"
+    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
+  <modelVersion>4.0.0</modelVersion>
+  <groupId>de.mpc</groupId>
+  <artifactId>PDLibrary</artifactId>
+  <version>0.0.1-SNAPSHOT</version>
+  <description>POM was created from install:install-file</description>
+</project>
diff --git a/libs/de/mpc/PDLibrary/maven-metadata-local.xml b/libs/de/mpc/PDLibrary/maven-metadata-local.xml
@@ -0,0 +1,11 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<metadata>
+  <groupId>de.mpc</groupId>
+  <artifactId>PDLibrary</artifactId>
+  <versioning>
+    <versions>
+      <version>0.0.1-SNAPSHOT</version>
+    </versions>
+    <lastUpdated>20150903080913</lastUpdated>
+  </versioning>
+</metadata>
diff --git a/libs/umontreal/iro/lecuyer/gof/ssj/2.5.0/ssj-2.5.0.jar b/libs/umontreal/iro/lecuyer/gof/ssj/2.5.0/ssj-2.5.0.jar
diff --git a/libs/umontreal/iro/lecuyer/gof/ssj/2.5.0/ssj-2.5.0.pom b/libs/umontreal/iro/lecuyer/gof/ssj/2.5.0/ssj-2.5.0.pom
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd" xmlns="http://maven.apache.org/POM/4.0.0"
+    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
+  <modelVersion>4.0.0</modelVersion>
+  <groupId>umontreal.iro.lecuyer.gof</groupId>
+  <artifactId>ssj</artifactId>
+  <version>2.5.0</version>
+  <description>POM was created from install:install-file</description>
+</project>
diff --git a/libs/umontreal/iro/lecuyer/gof/ssj/maven-metadata-local.xml b/libs/umontreal/iro/lecuyer/gof/ssj/maven-metadata-local.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<metadata>
+  <groupId>umontreal.iro.lecuyer.gof</groupId>
+  <artifactId>ssj</artifactId>
+  <versioning>
+    <release>2.5.0</release>
+    <versions>
+      <version>2.5.0</version>
+    </versions>
+    <lastUpdated>20190628144317</lastUpdated>
+  </versioning>
+</metadata>
diff --git a/pia b/pia