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talonchandler authored Apr 19, 2023
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Expand Up @@ -29,7 +29,7 @@ PTI provides volumetric reconstructions of mean permittivity ($\propto$ material

![Data_flow](https://github.com/mehta-lab/waveorder/blob/main/Fig_Readme.png?raw=true)

The [example notebooks](examples/) illustrate simulations and reconstruction for 2D QLIPP, 3D PODT, and 2D/3D PTI methods.
The [example notebooks](https://github.com/mehta-lab/waveorder/tree/main/examples) illustrate simulations and reconstruction for 2D QLIPP, 3D PODT, and 2D/3D PTI methods.

If you are interested in deploying QLIPP or PODT for label-free imaging at scale, checkout our [napari plugin](https://www.napari-hub.org/plugins/recOrder-napari), [`recOrder-napari`](https://github.com/mehta-lab/recOrder).

Expand All @@ -39,7 +39,7 @@ In addition to label-free reconstruction algorithms, `waveorder` also implements

1. Correlative measurements of biomolecular density and orientation from polarization-diverse widefield imaging ([multimodal Instant PolScope](https://opg.optica.org/boe/fulltext.cfm?uri=boe-13-5-3102&id=472350))

We provide an [example notebook](examples/experimental_reconstructions/fluorescence_deconvolution/) for widefield fluorescence deconvolution.
We provide an [example notebook](https://github.com/mehta-lab/waveorder/blob/main/examples/experimental_reconstructions/fluorescence_deconvolution/fluorescence_deconv.ipynb) for widefield fluorescence deconvolution.

## Citation

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