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docs/devel/pages/beta_diversity.html

@@ -1129,7 +1129,7 @@ <h1 class="title"><span id="sec-community-similarity" class="quarto-section-iden
 <td style="text-align: right;">6</td>
 <td style="text-align: right;">1.1157</td>
 <td style="text-align: right;">1.940</td>
-<td style="text-align: right;">0.031</td>
+<td style="text-align: right;">0.026</td>
 <td style="text-align: right;">3.991</td>
 <td style="text-align: right;">0.2795</td>
 </tr>
@@ -1138,7 +1138,7 @@ <h1 class="title"><span id="sec-community-similarity" class="quarto-section-iden
 <td style="text-align: right;">4</td>
 <td style="text-align: right;">0.5837</td>
 <td style="text-align: right;">1.522</td>
-<td style="text-align: right;">0.129</td>
+<td style="text-align: right;">0.151</td>
 <td style="text-align: right;">3.991</td>
 <td style="text-align: right;">0.1463</td>
 </tr>
@@ -1147,7 +1147,7 @@ <h1 class="title"><span id="sec-community-similarity" class="quarto-section-iden
 <td style="text-align: right;">1</td>
 <td style="text-align: right;">0.1679</td>
 <td style="text-align: right;">1.751</td>
-<td style="text-align: right;">0.115</td>
+<td style="text-align: right;">0.109</td>
 <td style="text-align: right;">3.991</td>
 <td style="text-align: right;">0.0421</td>
 </tr>
@@ -1276,7 +1276,7 @@ <h1 class="title"><span id="sec-community-similarity" class="quarto-section-iden
 <td style="text-align: right;">0.0628</td>
 <td style="text-align: right;">2.7440</td>
 <td style="text-align: right;">999</td>
-<td style="text-align: right;">0.120</td>
+<td style="text-align: right;">0.099</td>
 <td style="text-align: right;">1.0288</td>
 <td style="text-align: right;">0.2440</td>
 </tr>
@@ -1287,7 +1287,7 @@ <h1 class="title"><span id="sec-community-similarity" class="quarto-section-iden
 <td style="text-align: right;">0.0103</td>
 <td style="text-align: right;">0.4158</td>
 <td style="text-align: right;">999</td>
-<td style="text-align: right;">0.554</td>
+<td style="text-align: right;">0.536</td>
 <td style="text-align: right;">0.9283</td>
 <td style="text-align: right;">0.0111</td>
 </tr>
@@ -1298,7 +1298,7 @@ <h1 class="title"><span id="sec-community-similarity" class="quarto-section-iden
 <td style="text-align: right;">0.0113</td>
 <td style="text-align: right;">17.0255</td>
 <td style="text-align: right;">999</td>
-<td style="text-align: right;">0.412</td>
+<td style="text-align: right;">0.428</td>
 <td style="text-align: right;">0.3319</td>
 <td style="text-align: right;">0.9860</td>
 </tr>

docs/devel/pages/extra_material.html

@@ -1290,7 +1290,7 @@ <h1 class="title"><span id="sec-extras" class="quarto-section-identifier">Append
 <p>Printing a summary about the posterior:</p>
 <div class="cell" data-layout-align="center">
 <div class="sourceCode" id="cb40"><pre class="downlit sourceCode r code-with-copy"><code class="sourceCode R"><span><span class="fu"><a href="https://jsilve24.github.io/fido/reference/ppc_summary.html">ppc_summary</a></span><span class="op">(</span><span class="va">posterior</span><span class="op">)</span></span>
-<span><span class="co">##  Proportions of Observations within 95% Credible Interval: 0.9967794</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<span><span class="co">##  Proportions of Observations within 95% Credible Interval: 0.9968944</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 </div>
 <p>Plotting the summary of the posterior distributions of the regression parameters:</p>
 <div class="cell" data-layout-align="center">
@@ -1485,8 +1485,8 @@ <h1 class="title"><span id="sec-extras" class="quarto-section-identifier">Append
 <span><span class="co">##  </span></span>
 <span><span class="co">##  First  5  Cluster sizes:</span></span>
 <span><span class="co">##                     BC 1 BC 2 BC 3 BC 4 BC 5</span></span>
-<span><span class="co">##  Number of Rows:      17   15   14    3    8</span></span>
-<span><span class="co">##  Number of Columns:   13   14   10   10    7</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<span><span class="co">##  Number of Rows:      18   14   17    2    7</span></span>
+<span><span class="co">##  Number of Columns:   13   14    7   13    9</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 </div>
 <p>The object includes cluster information. However compared to <em>cobiclust</em>, <em>biclust</em> object includes only information about clusters that were found, not general cluster.</p>
 <p>Meaning that if one cluster size of 5 features was found out of 20 features, those 15 features do not belong to any cluster. That is why we have to create an additional cluster for features/samples that are not assigned into any cluster.</p>