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fix issue 88 plotAbundance rank #113

Merged
merged 25 commits into from
Jul 9, 2024
Merged

fix issue 88 plotAbundance rank #113

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3375c9c
fix issue 88 plotAbundance rank
Insaynoah Apr 10, 2024
e1b3df5
Merge branch 'devel' into devel
antagomir May 21, 2024
ff42ce7
Merge branch 'devel' into devel
Insaynoah Jun 3, 2024
ba96357
rank can now be set to null
Insaynoah Jun 3, 2024
6afcc05
fix rmarkdown issue
Insaynoah Jun 4, 2024
caf7146
rmd file fix
Insaynoah Jun 4, 2024
023ef09
rmd file fix
Insaynoah Jun 4, 2024
80ccbc2
Fixed issues
Insaynoah Jun 5, 2024
7fb25ba
Merge branch 'devel' into devel
antagomir Jun 19, 2024
cfc1c97
updated vignettes
Insaynoah Jun 19, 2024
e597743
Merge branch 'devel' of https://github.com/Insaynoah/miaViz into devel
Insaynoah Jun 19, 2024
fca2242
up
TuomasBorman Jun 25, 2024
cd4e0bf
requested changes + documentation update
Insaynoah Jun 26, 2024
494f7ff
Merge branch 'devel' of https://github.com/Insaynoah/miaViz into devel
Insaynoah Jun 26, 2024
e97ba54
error fix
Insaynoah Jun 26, 2024
5ac3525
check fix
Insaynoah Jun 27, 2024
54c2c6d
sets rank to first taxonomic rank if more than 500 features
Insaynoah Jun 27, 2024
8a014e8
error when rank is null and more than 100 features
Insaynoah Jun 27, 2024
d561182
Merge branch 'devel' into devel
antagomir Jul 3, 2024
2275ea0
up
TuomasBorman Jul 9, 2024
287e58b
up
TuomasBorman Jul 9, 2024
e1daf48
up
TuomasBorman Jul 9, 2024
2425ead
up
TuomasBorman Jul 9, 2024
4d7810e
up
TuomasBorman Jul 9, 2024
869aae0
up
TuomasBorman Jul 9, 2024
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2 changes: 1 addition & 1 deletion R/plotAbundance.R
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Original file line number Diff line number Diff line change
Expand Up @@ -180,7 +180,7 @@ setMethod("plotAbundance", signature = c("SummarizedExperiment"),
order_rank_by <- match.arg(order_rank_by, c("name","abund","revabund"))
.check_abund_plot_args(one_facet = one_facet,
ncol = ncol)
if( !is.null(features) ){
if( !is.null(features) & !is.null(rank) ){
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features <- match.arg(features, colnames(colData(x)))
}
########################### INPUT CHECK END ###########################
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