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Update subworkflows to avoid dynamic includes #60

Update subworkflows to avoid dynamic includes

Update subworkflows to avoid dynamic includes #60

Triggered via pull request November 6, 2024 16:05
Status Failure
Total duration 12m 51s
Artifacts

test.yml

on: pull_request
nf-test-changes
18s
prettier
9s
editorconfig
4s
pre-commit
9s
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: nf-test
confirm-pass
0s

Annotations

2 errors and 13 warnings
nf-core-lint-modules (msa_alignment)
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
nf-test (modules/mirpedrol/kalign/align, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/mirpedrol/kalign/align, singularity)
The following actions use a deprecated Node.js version and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/mirpedrol/muscle5/super5, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/mirpedrol/muscle5/super5, singularity)
The following actions use a deprecated Node.js version and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (modules/mirpedrol/mafft, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/mirpedrol/mafft, singularity)
The following actions use a deprecated Node.js version and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (subworkflows/mirpedrol/msa_guidetree, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (subworkflows/mirpedrol/msa_guidetree, singularity)
The following actions use a deprecated Node.js version and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (subworkflows/mirpedrol/msa_treealign, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (subworkflows/mirpedrol/msa_treealign, singularity)
The following actions use a deprecated Node.js version and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
nf-test (subworkflows/mirpedrol/msa_alignment, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (subworkflows/mirpedrol/msa_alignment, singularity)
The following actions use a deprecated Node.js version and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/