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Fix linting #62

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Fix linting

Fix linting #62

Triggered via pull request December 4, 2024 10:54
@mirpedrolmirpedrol
opened #17
run-pre-commit
Status Failure
Total duration 19m 23s
Artifacts –

test.yml

on: pull_request
nf-test-changes
20s
nf-test-changes
prettier
28s
prettier
editorconfig
7s
editorconfig
pre-commit
1m 44s
pre-commit
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: nf-test
confirm-pass
0s
confirm-pass
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2 errors and 104 warnings
nf-test (modules/mirpedrol/untar, conda)
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
editorconfig
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test-changes
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
prettier
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (tcoffee/seqreformat)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (clustalo/align)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (clustalo/guidetree)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (tcoffee/libalign)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (magus/guidetree)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (tcoffee/irmsd)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (famsa/treealign)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (famsa/align)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (kalign/align)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (magus/align)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (learnmsa/align)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (famsa/guidetree)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (clustalo/treealign)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (mtmalign/align)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (tcoffee/alncompare)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (tcoffee/align)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
pre-commit
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
nf-core-lint-modules (pigz/compress)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (magus/treealign)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (untar)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (tcoffee/tcs)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (msa_treealign)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (tcoffee/treealign)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (msa_alignment)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (msa_guidetree)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (tcoffee/structurealign)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/clustalo/align, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/famsa/guidetree, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/clustalo/treealign, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/clustalo/treealign, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/famsa/treealign, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/famsa/align, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/famsa/align, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/clustalo/guidetree, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/clustalo/guidetree, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/famsa/treealign, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/kalign/align, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/famsa/guidetree, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/kalign/align, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/clustalo/guidetree, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/clustalo/align, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/clustalo/align, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/famsa/guidetree, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/famsa/align, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/famsa/treealign, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/clustalo/treealign, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/magus/align, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/magus/guidetree, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/magus/guidetree, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/kalign/align, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/magus/treealign, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/pigz/compress, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/mtmalign/align, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/pigz/compress, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/mtmalign/align, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/magus/align, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/magus/guidetree, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/libalign, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/learnmsa/align, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/magus/treealign, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/magus/treealign, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/magus/align, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/libalign, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/mtmalign/align, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/pigz/compress, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/learnmsa/align, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/align, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/seqreformat, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/seqreformat, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/tcs, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/irmsd, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/libalign, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/align, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/treealign, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/structurealign, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/tcs, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/untar, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/untar, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/seqreformat, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/alncompare, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/alncompare, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/irmsd, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/treealign, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/structurealign, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/irmsd, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (subworkflows/mirpedrol/msa_guidetree, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/structurealign, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/align, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/tcs, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/alncompare, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/treealign, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/untar, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (subworkflows/mirpedrol/msa_treealign, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (subworkflows/mirpedrol/msa_guidetree, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (subworkflows/mirpedrol/msa_guidetree, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (subworkflows/mirpedrol/msa_treealign, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (subworkflows/mirpedrol/msa_alignment, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (subworkflows/mirpedrol/msa_alignment, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (subworkflows/mirpedrol/msa_treealign, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
confirm-pass
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636