Run tests

Update classes names with prefix and/or suffix and add class names to modules meta.yml #66

Re-run triggered January 15, 2025 15:16

mirpedrol

#18

update-classes-name

Status Failure

Total duration 10m 30s

Artifacts –

test.yml

on: pull_request

Matrix: nf-core-lint-modules

Matrix: nf-test

confirm-pass

Annotations

25 errors and 92 warnings

nf-core-lint-modules (msa_alignment)

Process completed with exit code 1.

nf-core-lint-modules (msa_guidetree)

Process completed with exit code 1.

nf-core-lint-modules (msa_treealign)

Process completed with exit code 1.

nf-test (modules/mirpedrol/mafft, singularity)

Process completed with exit code 1.

nf-test (modules/mirpedrol/clustalo/treealign, singularity)

Process completed with exit code 1.

nf-test (modules/mirpedrol/famsa/align, singularity)

Process completed with exit code 1.

nf-test (modules/mirpedrol/clustalo/align, singularity)

Process completed with exit code 1.

nf-test (modules/mirpedrol/famsa/treealign, singularity)

Process completed with exit code 1.

nf-test (modules/mirpedrol/tcoffee/treealign, singularity)

Process completed with exit code 1.

nf-test (modules/mirpedrol/muscle5/super5, singularity)

Process completed with exit code 1.

nf-test (modules/mirpedrol/famsa/guidetree, singularity)

Process completed with exit code 1.

nf-test (modules/mirpedrol/kalign/align, singularity)

Process completed with exit code 1.

nf-test (modules/mirpedrol/magus/treealign, singularity)

Process completed with exit code 1.

nf-test (modules/mirpedrol/pigz/compress, singularity)

Process completed with exit code 1.

nf-test (modules/mirpedrol/clustalo/guidetree, singularity)

Process completed with exit code 1.

nf-test (modules/mirpedrol/tcoffee/tcs, singularity)

Process completed with exit code 1.

nf-test (modules/mirpedrol/magus/guidetree, singularity)

Process completed with exit code 1.

nf-test (subworkflows/mirpedrol/msa_treealign, singularity)

Process completed with exit code 1.

nf-test (modules/mirpedrol/tcoffee/align, singularity)

Process completed with exit code 1.

nf-test (subworkflows/mirpedrol/msa_guidetree, singularity)

Process completed with exit code 1.

nf-test (modules/mirpedrol/magus/align, singularity)

Process completed with exit code 1.

nf-test (modules/mirpedrol/learnmsa/align, singularity)

Process completed with exit code 1.

nf-test (modules/mirpedrol/tcoffee/irmsd, singularity)

Process completed with exit code 1.

nf-test (subworkflows/mirpedrol/msa_alignment, singularity)

Process completed with exit code 1.

confirm-pass

Process completed with exit code 1.

pre-commit

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

pre-commit

The `python-version` input is not set. The version of Python currently in `PATH` will be used.

nf-test-changes

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

prettier

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

editorconfig

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-core-lint-modules (tcoffee/treealign)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-core-lint-modules (pigz/compress)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-core-lint-modules (clustalo/treealign)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-core-lint-modules (kalign/align)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-core-lint-modules (tcoffee/tcs)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-core-lint-modules (famsa/treealign)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-core-lint-modules (learnmsa/align)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-core-lint-modules (famsa/guidetree)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-core-lint-modules (famsa/align)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-core-lint-modules (magus/guidetree)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-core-lint-modules (muscle5/super5)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-core-lint-modules (clustalo/align)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-core-lint-modules (clustalo/guidetree)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-core-lint-modules (tcoffee/irmsd)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-core-lint-modules (magus/treealign)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-core-lint-modules (mafft)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-core-lint-modules (magus/align)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/tcoffee/treealign, conda)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-core-lint-modules (tcoffee/align)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/clustalo/treealign, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/pigz/compress, conda)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/clustalo/treealign, conda)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/pigz/compress, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/kalign/align, conda)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/tcoffee/treealign, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/kalign/align, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/famsa/treealign, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/famsa/treealign, conda)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/tcoffee/tcs, conda)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/famsa/align, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/tcoffee/tcs, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/famsa/align, conda)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/famsa/guidetree, conda)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/learnmsa/align, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/muscle5/super5, conda)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/famsa/guidetree, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (subworkflows/mirpedrol/msa_alignment, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/magus/guidetree, conda)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/muscle5/super5, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/clustalo/align, conda)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/magus/guidetree, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/clustalo/guidetree, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/clustalo/guidetree, conda)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (subworkflows/mirpedrol/msa_guidetree, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (subworkflows/mirpedrol/msa_guidetree, conda)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/mafft, conda)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/clustalo/align, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/mafft, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (subworkflows/mirpedrol/msa_treealign, conda)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (subworkflows/mirpedrol/msa_treealign, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/magus/treealign, conda)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/magus/treealign, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/magus/align, conda)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/tcoffee/irmsd, conda)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/magus/align, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/tcoffee/irmsd, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/tcoffee/align, docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/tcoffee/align, conda)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/magus/align, singularity)

Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down

nf-test (subworkflows/mirpedrol/msa_treealign, singularity)

nf-core-lint-modules (msa_alignment)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/tcoffee/align, singularity)

nf-core-lint-modules (msa_guidetree)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-core-lint-modules (msa_treealign)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/mafft, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/clustalo/treealign, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/famsa/align, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/clustalo/align, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/famsa/treealign, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/tcoffee/treealign, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/tcoffee/irmsd, singularity)

nf-test (modules/mirpedrol/muscle5/super5, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/famsa/guidetree, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/kalign/align, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/magus/treealign, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/pigz/compress, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/clustalo/guidetree, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/tcoffee/tcs, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/magus/guidetree, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (subworkflows/mirpedrol/msa_treealign, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/tcoffee/align, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (subworkflows/mirpedrol/msa_guidetree, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/magus/align, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/learnmsa/align, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (modules/mirpedrol/tcoffee/irmsd, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

nf-test (subworkflows/mirpedrol/msa_alignment, singularity)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

confirm-pass

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

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Update classes names with prefix and/or suffix and add class names to modules meta.yml #66

Summary