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Update classes names with prefix and/or suffix and add class names to modules meta.yml #68

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Update classes names with prefix and/or suffix and add class names to modules meta.yml

Update classes names with prefix and/or suffix and add class names to modules meta.yml #68

Triggered via pull request January 15, 2025 15:39
@mirpedrolmirpedrol
synchronize #18
update-classes-name
Status Cancelled
Total duration 5m 50s
Artifacts –

test.yml

on: pull_request
nf-test-changes
20s
nf-test-changes
prettier
6s
prettier
editorconfig
6s
editorconfig
pre-commit
14s
pre-commit
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: nf-test
confirm-pass
0s
confirm-pass
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56 errors and 72 warnings
nf-core-lint-modules (msa_guidetree)
Process completed with exit code 1.
nf-core-lint-modules (msa_alignment)
Process completed with exit code 1.
nf-core-lint-modules (msa_treealign)
Process completed with exit code 1.
nf-test (modules/mirpedrol/clustalo/treealign, singularity)
Unexpected HTTP response: 404
nf-test (modules/mirpedrol/clustalo/align, singularity)
Unexpected HTTP response: 404
nf-test (modules/mirpedrol/famsa/guidetree, singularity)
Unexpected HTTP response: 404
nf-test (modules/mirpedrol/famsa/align, singularity)
Unexpected HTTP response: 404
nf-test (modules/mirpedrol/famsa/treealign, singularity)
Unexpected HTTP response: 404
nf-test (modules/mirpedrol/clustalo/guidetree, singularity)
Unexpected HTTP response: 404
nf-test (modules/mirpedrol/kalign/align, singularity)
Unexpected HTTP response: 404
nf-test (modules/mirpedrol/learnmsa/align, singularity)
Unexpected HTTP response: 404
nf-test (modules/mirpedrol/mafft, singularity)
Unexpected HTTP response: 404
nf-test (modules/mirpedrol/magus/treealign, singularity)
Unexpected HTTP response: 404
nf-test (modules/mirpedrol/magus/align, singularity)
Unexpected HTTP response: 404
nf-test (modules/mirpedrol/muscle5/super5, singularity)
Unexpected HTTP response: 404
nf-test (modules/mirpedrol/pigz/compress, singularity)
Unexpected HTTP response: 404
nf-test (modules/mirpedrol/magus/guidetree, singularity)
Unexpected HTTP response: 404
nf-test (modules/mirpedrol/tcoffee/treealign, singularity)
Unexpected HTTP response: 404
nf-test (subworkflows/mirpedrol/msa_guidetree, singularity)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (subworkflows/mirpedrol/msa_guidetree, docker)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (subworkflows/mirpedrol/msa_treealign, conda)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (modules/mirpedrol/magus/treealign, docker)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (subworkflows/mirpedrol/msa_guidetree, conda)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (subworkflows/mirpedrol/msa_guidetree, conda)
A task was canceled.
nf-test (modules/mirpedrol/tcoffee/align, singularity)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (modules/mirpedrol/tcoffee/align, singularity)
Unexpected HTTP response: 404
nf-test (modules/mirpedrol/tcoffee/align, singularity)
The operation was canceled.
nf-test (modules/mirpedrol/tcoffee/irmsd, docker)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (modules/mirpedrol/tcoffee/irmsd, docker)
The operation was canceled.
nf-test (modules/mirpedrol/tcoffee/tcs, singularity)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (modules/mirpedrol/tcoffee/tcs, singularity)
Unexpected HTTP response: 404
nf-test (modules/mirpedrol/tcoffee/tcs, singularity)
The operation was canceled.
nf-test (modules/mirpedrol/tcoffee/irmsd, conda)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (modules/mirpedrol/tcoffee/irmsd, conda)
The operation was canceled.
nf-test (modules/mirpedrol/tcoffee/tcs, docker)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (modules/mirpedrol/tcoffee/tcs, docker)
The operation was canceled.
nf-test (subworkflows/mirpedrol/msa_alignment, singularity)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (modules/mirpedrol/tcoffee/tcs, conda)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (modules/mirpedrol/tcoffee/tcs, conda)
The operation was canceled.
nf-test (subworkflows/mirpedrol/msa_treealign, docker)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (subworkflows/mirpedrol/msa_treealign, singularity)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (subworkflows/mirpedrol/msa_treealign, singularity)
The operation was canceled.
nf-test (modules/mirpedrol/tcoffee/irmsd, singularity)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (modules/mirpedrol/tcoffee/irmsd, singularity)
The operation was canceled.
nf-test (subworkflows/mirpedrol/msa_alignment, docker)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (modules/mirpedrol/tcoffee/align, docker)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (modules/mirpedrol/tcoffee/align, docker)
The operation was canceled.
nf-test (modules/mirpedrol/tcoffee/align, conda)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (modules/mirpedrol/tcoffee/align, conda)
The operation was canceled.
nf-test (modules/mirpedrol/tcoffee/treealign, docker)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (modules/mirpedrol/tcoffee/treealign, docker)
The operation was canceled.
nf-test (modules/mirpedrol/tcoffee/treealign, conda)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (modules/mirpedrol/tcoffee/treealign, conda)
The operation was canceled.
nf-test (modules/mirpedrol/learnmsa/align, docker)
Canceling since a higher priority waiting request for 'Run tests-18' exists
nf-test (modules/mirpedrol/learnmsa/align, docker)
The operation was canceled.
confirm-pass
Process completed with exit code 1.
prettier
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
editorconfig
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
pre-commit
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
nf-test-changes
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (clustalo/treealign)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
nf-core-lint-modules (mafft)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
nf-core-lint-modules (famsa/guidetree)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
nf-core-lint-modules (magus/guidetree)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
nf-core-lint-modules (msa_guidetree)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (msa_alignment)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (tcoffee/treealign)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
nf-core-lint-modules (msa_treealign)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (magus/treealign)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (mafft)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (clustalo/align)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (tcoffee/irmsd)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (muscle5/super5)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (famsa/align)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (learnmsa/align)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (magus/guidetree)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (famsa/treealign)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (tcoffee/align)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (clustalo/treealign)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (tcoffee/tcs)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (pigz/compress)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (magus/align)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (clustalo/guidetree)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (kalign/align)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (famsa/guidetree)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-core-lint-modules (tcoffee/treealign)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/clustalo/treealign, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/clustalo/align, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/famsa/guidetree, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/famsa/align, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/famsa/guidetree, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/famsa/align, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/famsa/treealign, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/famsa/guidetree, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/famsa/treealign, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/clustalo/align, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/clustalo/guidetree, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/clustalo/align, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/clustalo/guidetree, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/famsa/align, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/clustalo/guidetree, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/kalign/align, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/famsa/treealign, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/clustalo/treealign, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/kalign/align, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/clustalo/treealign, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/learnmsa/align, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/kalign/align, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/mafft, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/magus/treealign, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/magus/align, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/muscle5/super5, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/mafft, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/mafft, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/pigz/compress, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/magus/align, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/magus/guidetree, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/magus/guidetree, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/magus/guidetree, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/muscle5/super5, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/magus/align, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/pigz/compress, docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/muscle5/super5, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/pigz/compress, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/magus/treealign, conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
nf-test (modules/mirpedrol/tcoffee/treealign, singularity)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
confirm-pass
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636