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Subset nf-core/modules repo #3

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Subset nf-core/modules repo

Subset nf-core/modules repo #3

Triggered via pull request June 28, 2024 10:19
@mirpedrolmirpedrol
synchronize #1
msa-modules-subset
Status Cancelled
Total duration 11m 55s
Artifacts –

test.yml

on: pull_request
nf-test-changes
16s
nf-test-changes
prettier
4s
prettier
editorconfig
4s
editorconfig
pre-commit
9s
pre-commit
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: nf-test
confirm-pass
0s
confirm-pass
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Annotations

93 errors and 32 warnings
prettier
Process completed with exit code 1.
nf-core-lint-modules (modules/class-modules/tcoffee/alncompare)
Process completed with exit code 1.
nf-core-lint-modules (modules/class-modules/kalign/align)
Process completed with exit code 1.
nf-core-lint-modules (modules/class-modules/famsa/guidetree)
Process completed with exit code 1.
nf-core-lint-modules (modules/class-modules/famsa/align)
Process completed with exit code 1.
nf-core-lint-modules (modules/class-modules/tcoffee/align)
Process completed with exit code 1.
nf-core-lint-modules (modules/class-modules/tcoffee/tcs)
Process completed with exit code 1.
nf-core-lint-modules (modules/class-modules/learnmsa/align)
Process completed with exit code 1.
nf-core-lint-modules (modules/class-modules/magus/align)
Process completed with exit code 1.
nf-core-lint-modules (modules/class-modules/clustalo/guidetree)
Process completed with exit code 1.
nf-core-lint-modules (modules/class-modules/muscle5/super5)
Process completed with exit code 1.
nf-core-lint-modules (modules/class-modules/mtmalign/align)
Process completed with exit code 1.
nf-core-lint-modules (modules/class-modules/clustalo/align)
Process completed with exit code 1.
nf-core-lint-modules (modules/class-modules/tcoffee/seqreformat)
Process completed with exit code 1.
nf-core-lint-modules (modules/class-modules/mafft)
Process completed with exit code 1.
nf-core-lint-modules (modules/class-modules/tcoffee/irmsd)
Process completed with exit code 1.
nf-core-lint-modules (modules/class-modules/magus/guidetree)
Process completed with exit code 1.
nf-test (modules/class-modules/mafft, docker)
Unexpected HTTP response: 429
nf-test (modules/class-modules/tcoffee/alncompare, conda)
Invalid miniconda version! Must be among
nf-test (modules/class-modules/clustalo/guidetree, conda)
Unexpected HTTP response: 429
nf-test (modules/class-modules/tcoffee/alncompare, docker)
Invalid miniconda version! Must be among
nf-test (modules/class-modules/famsa/guidetree, docker)
Unexpected HTTP response: 429
nf-test (modules/class-modules/tcoffee/irmsd, conda)
Unexpected HTTP response: 429
nf-test (modules/class-modules/clustalo/guidetree, docker)
Unexpected HTTP response: 429
nf-test (modules/class-modules/famsa/align, docker)
Unexpected HTTP response: 429
nf-test (modules/class-modules/tcoffee/irmsd, docker)
Unexpected HTTP response: 429
nf-test (modules/class-modules/famsa/align, conda)
Unexpected HTTP response: 429
nf-test (modules/class-modules/clustalo/align, conda)
Unexpected HTTP response: 429
nf-test (modules/class-modules/clustalo/align, docker)
Invalid miniconda version! Must be among
nf-test (modules/class-modules/mtmalign/align, singularity)
Unexpected HTTP response: 429
nf-test (modules/class-modules/mafft, singularity)
Invalid miniconda version! Must be among
nf-test (modules/class-modules/tcoffee/alncompare, singularity)
Unexpected HTTP response: 429
nf-test (modules/class-modules/tcoffee/irmsd, singularity)
Unexpected HTTP response: 429
nf-test (modules/class-modules/clustalo/align, singularity)
Unexpected HTTP response: 429
nf-test (modules/class-modules/clustalo/guidetree, singularity)
Unexpected HTTP response: 429
nf-test (modules/class-modules/famsa/guidetree, singularity)
Unexpected HTTP response: 429
nf-test (modules/class-modules/famsa/align, singularity)
Unexpected HTTP response: 429
nf-test (modules/class-modules/famsa/guidetree, conda)
Invalid miniconda version! Must be among
nf-test (modules/class-modules/kalign/align, docker)
Invalid miniconda version! Must be among
nf-test (modules/class-modules/kalign/align, conda)
Unexpected HTTP response: 429
nf-test (modules/class-modules/learnmsa/align, docker)
Unexpected HTTP response: 429
nf-test (modules/class-modules/learnmsa/align, conda)
Unexpected HTTP response: 429
nf-test (modules/class-modules/muscle5/super5, docker)
Unexpected HTTP response: 429
nf-test (modules/class-modules/magus/align, docker)
Invalid miniconda version! Must be among
nf-test (modules/class-modules/magus/guidetree, conda)
Unexpected HTTP response: 429
nf-test (modules/class-modules/magus/guidetree, docker)
Unexpected HTTP response: 429
nf-test (modules/class-modules/mtmalign/align, docker)
Invalid miniconda version! Must be among
nf-test (modules/class-modules/kalign/align, singularity)
Unexpected HTTP response: 429
nf-test (modules/class-modules/muscle5/super5, singularity)
Unexpected HTTP response: 429
nf-test (modules/class-modules/mafft, conda)
Invalid miniconda version! Must be among
nf-test (modules/class-modules/tcoffee/tcs, docker)
Canceling since a higher priority waiting request for 'Run tests-1' exists
nf-test (modules/class-modules/tcoffee/tcs, docker)
Unexpected HTTP response: 429
nf-test (modules/class-modules/tcoffee/tcs, docker)
The operation was canceled.
nf-test (modules/class-modules/tcoffee/tcs, singularity)
Canceling since a higher priority waiting request for 'Run tests-1' exists
nf-test (modules/class-modules/tcoffee/tcs, singularity)
The operation was canceled.
nf-test (modules/class-modules/magus/align, singularity)
Canceling since a higher priority waiting request for 'Run tests-1' exists
nf-test (modules/class-modules/magus/align, singularity)
Unexpected HTTP response: 429
nf-test (modules/class-modules/magus/align, singularity)
The operation was canceled.
nf-test (modules/class-modules/tcoffee/tcs, conda)
Canceling since a higher priority waiting request for 'Run tests-1' exists
nf-test (modules/class-modules/tcoffee/tcs, conda)
Unexpected HTTP response: 429
nf-test (modules/class-modules/tcoffee/tcs, conda)
The operation was canceled.
nf-test (modules/class-modules/mtmalign/align, conda)
Canceling since a higher priority waiting request for 'Run tests-1' exists
nf-test (modules/class-modules/mtmalign/align, conda)
Unexpected HTTP response: 429
nf-test (modules/class-modules/tcoffee/align, docker)
Canceling since a higher priority waiting request for 'Run tests-1' exists
nf-test (modules/class-modules/tcoffee/align, docker)
Unexpected HTTP response: 429
nf-test (modules/class-modules/tcoffee/align, docker)
The operation was canceled.
nf-test (modules/class-modules/tcoffee/seqreformat, singularity)
Canceling since a higher priority waiting request for 'Run tests-1' exists
nf-test (modules/class-modules/tcoffee/seqreformat, singularity)
Unexpected HTTP response: 429
nf-test (modules/class-modules/tcoffee/align, singularity)
Canceling since a higher priority waiting request for 'Run tests-1' exists
nf-test (modules/class-modules/tcoffee/seqreformat, singularity)
The operation was canceled.
nf-test (modules/class-modules/tcoffee/align, singularity)
The operation was canceled.
nf-test (modules/class-modules/muscle5/super5, conda)
Canceling since a higher priority waiting request for 'Run tests-1' exists
nf-test (modules/class-modules/muscle5/super5, conda)
Unexpected HTTP response: 429
nf-test (modules/class-modules/muscle5/super5, conda)
The operation was canceled.
nf-test (modules/class-modules/tcoffee/seqreformat, conda)
Canceling since a higher priority waiting request for 'Run tests-1' exists
nf-test (modules/class-modules/tcoffee/seqreformat, conda)
Unexpected HTTP response: 429
nf-test (modules/class-modules/tcoffee/seqreformat, conda)
The operation was canceled.
nf-test (modules/class-modules/tcoffee/align, conda)
Canceling since a higher priority waiting request for 'Run tests-1' exists
nf-test (modules/class-modules/tcoffee/align, conda)
Unexpected HTTP response: 429
nf-test (modules/class-modules/tcoffee/align, conda)
The operation was canceled.
nf-test (modules/class-modules/learnmsa/align, singularity)
Canceling since a higher priority waiting request for 'Run tests-1' exists
nf-test (modules/class-modules/learnmsa/align, singularity)
Invalid miniconda version! Must be among
nf-test (modules/class-modules/learnmsa/align, singularity)
The operation was canceled.
nf-test (modules/class-modules/tcoffee/seqreformat, docker)
Canceling since a higher priority waiting request for 'Run tests-1' exists
nf-test (modules/class-modules/tcoffee/seqreformat, docker)
Unexpected HTTP response: 429
nf-test (modules/class-modules/tcoffee/seqreformat, docker)
The operation was canceled.
nf-test (modules/class-modules/magus/align, conda)
Canceling since a higher priority waiting request for 'Run tests-1' exists
nf-test (modules/class-modules/magus/align, conda)
Invalid miniconda version! Must be among
nf-test (modules/class-modules/magus/align, conda)
The operation was canceled.
nf-test (modules/class-modules/magus/guidetree, singularity)
Canceling since a higher priority waiting request for 'Run tests-1' exists
nf-test (modules/class-modules/magus/guidetree, singularity)
Unexpected HTTP response: 429
nf-test (modules/class-modules/magus/guidetree, singularity)
The operation was canceled.
confirm-pass
Process completed with exit code 1.
pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
nf-test (modules/class-modules/tcoffee/alncompare, conda)
Error: Unexpected HTTP response: 429
nf-test (modules/class-modules/tcoffee/alncompare, docker)
Error: Unexpected HTTP response: 429
nf-test (modules/class-modules/clustalo/align, docker)
Error: Unexpected HTTP response: 429
nf-test (modules/class-modules/mtmalign/align, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-singularity@v7. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (modules/class-modules/mtmalign/align, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/class-modules/mafft, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-singularity@v7. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (modules/class-modules/mafft, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/class-modules/mafft, singularity)
Error: Unexpected HTTP response: 429
nf-test (modules/class-modules/tcoffee/alncompare, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-singularity@v7. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (modules/class-modules/tcoffee/alncompare, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/class-modules/tcoffee/irmsd, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-singularity@v7. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (modules/class-modules/tcoffee/irmsd, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/class-modules/clustalo/align, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-singularity@v7. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (modules/class-modules/clustalo/align, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/class-modules/clustalo/guidetree, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-singularity@v7. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (modules/class-modules/clustalo/guidetree, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/class-modules/famsa/guidetree, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-singularity@v7. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (modules/class-modules/famsa/guidetree, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/class-modules/famsa/align, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-singularity@v7. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (modules/class-modules/famsa/align, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/class-modules/famsa/guidetree, conda)
Error: Unexpected HTTP response: 429
nf-test (modules/class-modules/kalign/align, docker)
Error: Unexpected HTTP response: 429
nf-test (modules/class-modules/magus/align, docker)
Error: Unexpected HTTP response: 429
nf-test (modules/class-modules/mtmalign/align, docker)
Error: Unexpected HTTP response: 429
nf-test (modules/class-modules/kalign/align, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-singularity@v7. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (modules/class-modules/kalign/align, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/class-modules/muscle5/super5, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-singularity@v7. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (modules/class-modules/muscle5/super5, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-test (modules/class-modules/mafft, conda)
Error: Unexpected HTTP response: 429
nf-test (modules/class-modules/learnmsa/align, singularity)
Error: Unexpected HTTP response: 429
nf-test (modules/class-modules/magus/align, conda)
Error: Unexpected HTTP response: 429