Run tests

Manually curate all algin modules #22

Triggered via pull request July 10, 2024 14:15

mirpedrol

synchronize #4

curate-align-modules

Status Failure

Total duration 12m 39s

Artifacts –

test.yml

on: pull_request

Matrix: nf-core-lint-modules

Matrix: nf-test

confirm-pass

Annotations

19 errors and 35 warnings

nf-core-lint-modules (tcoffee/libalign)

Process completed with exit code 1.

nf-test (modules/class-modules/tcoffee/libalign, docker)

Process completed with exit code 1.

nf-test (modules/class-modules/tcoffee/libalign, conda)

Process completed with exit code 1.

nf-test (modules/class-modules/tcoffee/tcs, docker)

Process completed with exit code 1.

nf-test (modules/class-modules/tcoffee/libalign, singularity)

Process completed with exit code 1.

nf-test (modules/class-modules/tcoffee/tcs, conda)

Process completed with exit code 1.

nf-test (modules/class-modules/mtmalign/align, docker)

Process completed with exit code 1.

nf-test (modules/class-modules/mafft, docker)

Process completed with exit code 1.

nf-test (modules/class-modules/tcoffee/structurealign, docker)

Process completed with exit code 1.

nf-test (modules/class-modules/mafft, conda)

Process completed with exit code 1.

nf-test (modules/class-modules/learnmsa/align, conda)

Process completed with exit code 1.

nf-test (modules/class-modules/tcoffee/tcs, singularity)

Process completed with exit code 1.

nf-test (modules/class-modules/tcoffee/treealign, docker)

Process completed with exit code 1.

nf-test (modules/class-modules/tcoffee/structurealign, conda)

Process completed with exit code 1.

nf-test (modules/class-modules/mafft, singularity)

Process completed with exit code 1.

nf-test (modules/class-modules/tcoffee/structurealign, singularity)

Process completed with exit code 1.

nf-test (modules/class-modules/tcoffee/treealign, conda)

Process completed with exit code 1.

nf-test (modules/class-modules/tcoffee/treealign, singularity)

Process completed with exit code 1.

confirm-pass

Process completed with exit code 1.

pre-commit

The `python-version` input is not set. The version of Python currently in `PATH` will be used.

nf-test (modules/class-modules/tcoffee/libalign, singularity)

The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

nf-test (modules/class-modules/tcoffee/libalign, singularity)

The following actions uses Node.js version which is deprecated and will be forced to run on node20: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

nf-test (modules/class-modules/famsa/align, singularity)

nf-test (modules/class-modules/clustalo/align, singularity)

nf-test (modules/class-modules/clustalo/treealign, singularity)

nf-test (modules/class-modules/magus/treealign, singularity)

nf-test (modules/class-modules/tcoffee/align, singularity)

nf-test (modules/class-modules/famsa/treealign, singularity)

nf-test (modules/class-modules/kalign/align, singularity)

nf-test (modules/class-modules/mtmalign/align, singularity)

nf-test (modules/class-modules/tcoffee/tcs, singularity)

nf-test (modules/class-modules/muscle5/super5, singularity)

nf-test (modules/class-modules/mafft, singularity)

nf-test (modules/class-modules/tcoffee/structurealign, singularity)

nf-test (modules/class-modules/magus/align, singularity)

nf-test (modules/class-modules/tcoffee/irmsd, singularity)

nf-test (modules/class-modules/tcoffee/treealign, singularity)

nf-test (modules/class-modules/learnmsa/align, singularity)

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Manually curate all algin modules #22

Summary