refactor: cleanup (#43)

Refs: mljs/ml#174 (comment)

.github/workflows/documentationjs.yml

@@ -1,6 +1,7 @@
 name: Deploy documentation.js on GitHub pages
 
 on:
+  workflow_dispatch:
   release:
     types: [published]
 
@@ -12,9 +13,9 @@ jobs:
       - name: Build documentation
         uses: zakodium/documentationjs-action@v1
       - name: Deploy to GitHub pages
-        uses: JamesIves/github-pages-deploy-action@releases/v3
+        uses: JamesIves/github-pages-deploy-action@releases/v4
         with:
-          GITHUB_TOKEN: ${{ secrets.BOT_TOKEN }}
-          BRANCH: gh-pages
-          FOLDER: docs
-          CLEAN: true
+          token: ${{ secrets.BOT_TOKEN }}
+          branch: gh-pages
+          folder: docs
+          clean: true

.github/workflows/nodejs.yml

@@ -2,35 +2,13 @@ name: Node.js CI
 
 on:
   push:
-    branches: master
+    branches:
+      - master
   pull_request:
 
 jobs:
-  lint:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v2
-      - uses: actions/setup-node@v2-beta
-        with:
-          node-version: 16.x
-      - name: Install dependencies
-        run: npm install
-      - name: Run ESLint
-        run: npm run eslint
-  test:
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        node-version: [10.x, 12.x, 14.x]
-    steps:
-      - uses: actions/checkout@v2
-      - name: Use Node.js ${{ matrix.node-version }}
-        uses: actions/setup-node@v2-beta
-        with:
-          node-version: ${{ matrix.node-version }}
-      - name: Install dependencies
-        run: npm install
-      - name: Run tests
-        run: npm run test-coverage
-      - name: Send coverage report to Codecov
-        uses: codecov/codecov-action@v1
+  nodejs:
+    # Documentation: https://github.com/zakodium/workflows#nodejs-ci
+    uses: zakodium/workflows/.github/workflows/nodejs.yml@nodejs-v1
+    with:
+      node-version-matrix: '[12, 14, 16]'

.github/workflows/release.yml

@@ -6,27 +6,11 @@ on:
       - master
 
 jobs:
-  release-please:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: GoogleCloudPlatform/[email protected]
-        id: release
-        with:
-          token: ${{ secrets.BOT_TOKEN }}
-          release-type: node
-          package-name: 'ml-random-forest'
-          bump-minor-pre-major: Yes
-      - uses: actions/checkout@v2
-        # These if statements ensure that a publication only occurs when a new release is created
-        if: ${{ steps.release.outputs.release_created }}
-      - uses: actions/setup-node@v2-beta
-        with:
-          node-version: 14
-          registry-url: 'https://registry.npmjs.org'
-        if: ${{ steps.release.outputs.release_created }}
-      - run: npm install
-        if: ${{ steps.release.outputs.release_created }}
-      - run: npm publish
-        env:
-          NODE_AUTH_TOKEN: ${{ secrets.NPM_BOT_TOKEN }}
-        if: ${{ steps.release.outputs.release_created }}
+  release:
+    # Documentation: https://github.com/zakodium/workflows#release
+    uses: zakodium/workflows/.github/workflows/release.yml@release-v1
+    with:
+      npm: true
+    secrets:
+      github-token: ${{ secrets.BOT_TOKEN }}
+      npm-token: ${{ secrets.NPM_BOT_TOKEN }}

.prettierrc.json

@@ -0,0 +1,7 @@
+{
+    "arrowParens": "always",
+    "semi": true,
+    "singleQuote": true,
+    "tabWidth": 2,
+    "trailingComma": "all"
+}

package.json

@@ -13,10 +13,11 @@
     "compile": "rollup -c",
     "eslint": "eslint src",
     "eslint-fix": "npm run eslint -- --fix",
-    "prepublishOnly": "npm run compile",
-    "test": "npm run test-coverage && npm run eslint",
-    "test-only": "jest",
-    "test-coverage": "jest --coverage"
+    "prepack": "npm run compile",
+    "prettier": "prettier --check src",
+    "prettier-write": "prettier --write src",
+    "test": "npm run test-only && npm run eslint && npm run prettier",
+    "test-only": "jest --coverage"
   },
   "repository": {
     "type": "git",
@@ -42,27 +43,20 @@
   "devDependencies": {
     "@babel/plugin-transform-modules-commonjs": "^7.16.8",
     "benchmark": "^2.1.4",
-    "eslint": "^8.7.0",
-    "eslint-config-cheminfo": "^7.2.1",
-    "jest": "^27.4.7",
+    "eslint": "^8.10.0",
+    "eslint-config-cheminfo": "^7.2.2",
+    "jest": "^27.5.1",
     "ml-dataset-iris": "^1.2.1",
     "npm-run-all": "^4.1.5",
     "prettier": "^2.5.1",
-    "rollup": "^2.64.0"
+    "rollup": "^2.68.0"
   },
   "dependencies": {
-    "ml-array-mean": "^1.1.5",
-    "ml-array-median": "^1.1.5",
-    "ml-array-mode": "^1.1.4",
+    "ml-array-mean": "^1.1.6",
+    "ml-array-median": "^1.1.6",
+    "ml-array-mode": "^1.1.5",
     "ml-cart": "^2.1.1",
-    "ml-matrix": "^6.8.2",
+    "ml-matrix": "^6.9.0",
     "random-js": "^2.1.0"
-  },
-  "prettier": {
-    "arrowParens": "always",
-    "semi": true,
-    "singleQuote": true,
-    "tabWidth": 2,
-    "trailingComma": "all"
   }
 }