Update CI scripts to use pdm

.github/workflows/conda-build-lint-test.yml

@@ -28,24 +28,9 @@ jobs:
           activate-environment: "thor"
           auto-update-conda: true
           python-version: ${{ matrix.python-version }}
-      - name: Install dependencies (excluding adam_core and quivr since they are not available via conda)
-        run: |
-          tail +3 requirements.txt > requirements_conda.txt
-          conda install -c defaults -c conda-forge -c astropy -c moeyensj --file requirements_conda.txt --yes
-      - name: Update OBSCODE.dat
-        run: |
-          cd $CONDA_PREFIX/share/oorb
-          curl https://www.minorplanetcenter.net/iau/lists/ObsCodes.html -o ObsCodes.html
-          sed -e '2d' ObsCodes.html | grep -v "<" > OBSCODE.dat
-          rm -f ObsCodes.html
-          cp OBSCODE.dat $CONDA_PREFIX/share/openorb/OBSCODE.dat
-      - name: Install adam_core and quivr
-        run: |
-          pip install adam-core@git+https://github.com/B612-Asteroid-Institute/adam_core@main
-          pip install quivr@git+https://github.com/moeyensj/quivr@concatenate-empty-attributes
       - name: Build and install
-        run: pip install . --no-deps
+        run: pip install .[dev]
       - name: Lint
-        run: pre-commit run --all-files
+        run: pdm lint
       - name: Test
-        run: pytest . --cov
+        run: pdm test

.github/workflows/docker-build-lint-test.yml

@@ -22,6 +22,6 @@ jobs:
       - name: Build
         run: docker build --load -t thor:$IMAGE_TAG .
       - name: Lint
-        run: docker run -i thor:$IMAGE_TAG pre-commit run --all-files
+        run: docker run -i thor:$IMAGE_TAG pdm lint
       - name: Test
-        run: docker run -i thor:$IMAGE_TAG pytest . --cov
+        run: docker run -i thor:$IMAGE_TAG pdm test

.github/workflows/pip-build-integration-test.yml

@@ -21,23 +21,13 @@ jobs:
         uses: actions/checkout@v4
       - name: Get git tags
         run:  git fetch --prune --unshallow --tags
-      - name: Set up miniconda
-        uses: conda-incubator/setup-miniconda@v3
-        with:
-          activate-environment: "thor"
-          auto-update-conda: true
-          python-version: ${{ matrix.python-version }}
-      - name: Install openorb using conda
-        run: conda install -c defaults -c conda-forge openorb --yes
-      - name: Update OBSCODE.dat
-        run: |
-          cd $CONDA_PREFIX/share/oorb && ./updateOBSCODE
-          cp OBSCODE.dat $CONDA_PREFIX/share/openorb/OBSCODE.dat
-      - uses: actions/setup-python@v4
+      - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
           cache: 'pip' # caching pip dependencies
-      - name: Build and install
-        run: pip install .[tests]
+      - name: Install Dependencies
+        run: |
+          pip install pip --upgrade
+          pip install ".[dev]"
       - name: Integration Tests
-        run: pytest . -m "integration"
+        run: pdm test -k integration

.github/workflows/pip-build-lint-test-coverage.yml

@@ -22,32 +22,21 @@ jobs:
         uses: actions/checkout@v4
       - name: Get git tags
         run:  git fetch --prune --unshallow --tags
-      - name: Set up miniconda
-        uses: conda-incubator/setup-miniconda@v3
-        with:
-          activate-environment: "thor"
-          auto-update-conda: true
-          python-version: ${{ matrix.python-version }}
-      - name: Install openorb using conda
-        run: conda install -c defaults -c conda-forge openorb --yes
-      - name: Update OBSCODE.dat
-        run: |
-          cd $CONDA_PREFIX/share/oorb
-          curl https://www.minorplanetcenter.net/iau/lists/ObsCodes.html -o ObsCodes.html
-          sed -e '2d' ObsCodes.html | grep -v "<" > OBSCODE.dat
-          rm -f ObsCodes.html
-          cp OBSCODE.dat $CONDA_PREFIX/share/openorb/OBSCODE.dat
-      - uses: actions/setup-python@v4
+      - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
           cache: 'pip' # caching pip dependencies
-      - name: Build and install
-        run: pip install .[tests]
+      - name: Install Dependencies
+        run: |
+          pip install pip --upgrade
+          pip install ".[dev]"
       - name: Lint
-        run: pre-commit run --all-files
-      - name: Test
-        run: pytest . --cov --cov-report xml
-      - name: Coverage
+        run: pdm run lint
+      # - name: Type check
+      #   run: pdm run typecheck
+      - name: Test with coverage
+        run: pdm run coverage
+      - name: Coverage Report
         uses: coverallsapp/[email protected]
         with:
           github-token: ${{ secrets.COVERALLS_TOKEN }}