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Update vignettes to use ReadMrBayesTrees() #287

Update vignettes to use ReadMrBayesTrees()

Update vignettes to use ReadMrBayesTrees() #287

Triggered via pull request February 23, 2024 14:30
Status Failure
Total duration 6h 0m 28s
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R-CMD-check.yml

on: pull_request
Matrix: R-CMD-check
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6 errors and 24 warnings
ubuntu-latest (release)
Build process failed
ubuntu-latest (release)
Process completed with exit code 1.
ubuntu-latest (release)
package or namespace load failed for ‘Hmisc’ in dyn.load(file, DLLpath = DLLpath, ...):
ubuntu-latest (release)
package or namespace load failed for ‘stringr’ in dyn.load(file, DLLpath = DLLpath, ...):
ubuntu-latest (devel)
The job running on runner GitHub Actions 20 has exceeded the maximum execution time of 360 minutes.
ubuntu-latest (devel)
The operation was canceled.
windows-latest (release)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
windows-latest (release)
dependencies 'graph', 'Biostrings', 'seqLogo', 'bigQueryR', 'Biobase', 'MassSpecWavelet', 'marray', 'affy', 'limma', 'starsdata', 'BiocVersion', 'ganalytics', 'BiocParallel', 'spDataLarge', 'unix', 'Rcgmin', 'Rvmmin', 'Rgraphviz', 'rnaturalearthhires', 'doMC', 'Rcampdf', 'Rpoppler', 'tm.lexicon.GeneralInquirer', 'cmdstanr', 'glmmADMB', 'globaltest', 'taxidata', 'biomaRt', 'KEGGgraph', 'M3C', 'sylly.de', 'sylly.es', 'rsyslog', 'INLA', 'ComplexHeatmap', 'RandomFields', 'cairoDevice', 'RGtk2', 'snpStats', 'SwarmSVM', 'sangerseqR', 'ExactData', 'IRanges', 'RDCOMClient', 'gurobi', 'rrelaxiv', 'RTCGA.rnaseq', 'pageviews', 'rhdf5', 'mixOmics', 'genefilter', 'sva', 'Icens', 'mosaicCalc' are not available
windows-latest (release)
dependencies 'graph', 'Biostrings', 'seqLogo', 'TreeDistData', 'Rgraphviz' are not available
windows-latest (release)
cannot remove prior installation of package 'cli'
windows-latest (release)
restored 'cli'
macOS-latest (release)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
macOS-latest (release)
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘bigQueryR’, ‘Biobase’, ‘MassSpecWavelet’, ‘marray’, ‘affy’, ‘limma’, ‘starsdata’, ‘BiocVersion’, ‘ganalytics’, ‘BiocParallel’, ‘spDataLarge’, ‘Rcgmin’, ‘Rvmmin’, ‘Rgraphviz’, ‘rnaturalearthhires’, ‘Rcampdf’, ‘tm.lexicon.GeneralInquirer’, ‘cmdstanr’, ‘glmmADMB’, ‘globaltest’, ‘taxidata’, ‘biomaRt’, ‘KEGGgraph’, ‘M3C’, ‘sylly.de’, ‘sylly.es’, ‘INLA’, ‘ComplexHeatmap’, ‘RandomFields’, ‘cairoDevice’, ‘RGtk2’, ‘snpStats’, ‘SwarmSVM’, ‘sangerseqR’, ‘ExactData’, ‘IRanges’, ‘RDCOMClient’, ‘gurobi’, ‘rrelaxiv’, ‘RTCGA.rnaseq’, ‘pageviews’, ‘rhdf5’, ‘mixOmics’, ‘genefilter’, ‘sva’, ‘Icens’, ‘mosaicCalc’ are not available
macOS-latest (release)
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘TreeDistData’, ‘Rgraphviz’ are not available
ubuntu-20.04 (4.1)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
ubuntu-20.04 (4.1)
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘bigQueryR’, ‘Biobase’, ‘MassSpecWavelet’, ‘marray’, ‘affy’, ‘limma’, ‘OpenStreetMap’, ‘starsdata’, ‘BiocVersion’, ‘ganalytics’, ‘BiocParallel’, ‘spDataLarge’, ‘MuMIn’, ‘estimability’, ‘Rcgmin’, ‘Rvmmin’, ‘Rgraphviz’, ‘VGAMextra’, ‘rnaturalearthhires’, ‘Rcampdf’, ‘tm.lexicon.GeneralInquirer’, ‘bayesQR’, ‘cmdstanr’, ‘piecewiseSEM’, ‘glmmADMB’, ‘globaltest’, ‘taxidata’, ‘biomaRt’, ‘KEGGgraph’, ‘M3C’, ‘sylly.de’, ‘sylly.es’, ‘INLA’, ‘ComplexHeatmap’, ‘RandomFields’, ‘cairoDevice’, ‘RGtk2’, ‘snpStats’, ‘DescTools’, ‘SwarmSVM’, ‘sangerseqR’, ‘ExactData’, ‘IRanges’, ‘gurobi’, ‘rrelaxiv’, ‘RTCGA.rnaseq’, ‘pageviews’, ‘rhdf5’, ‘mixOmics’, ‘genefilter’, ‘sva’, ‘Icens’, ‘mosaicCalc’, ‘bnlearn’ are not available
ubuntu-20.04 (4.1)
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘TreeDistData’, ‘multiplex’ are not available
ubuntu-latest (release)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
ubuntu-latest (release)
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘bigQueryR’, ‘Biobase’, ‘MassSpecWavelet’, ‘marray’, ‘affy’, ‘limma’, ‘starsdata’, ‘BiocVersion’, ‘ganalytics’, ‘BiocParallel’, ‘spDataLarge’, ‘Rcgmin’, ‘Rvmmin’, ‘Rgraphviz’, ‘rnaturalearthhires’, ‘Rcampdf’, ‘tm.lexicon.GeneralInquirer’, ‘cmdstanr’, ‘glmmADMB’, ‘globaltest’, ‘taxidata’, ‘biomaRt’, ‘KEGGgraph’, ‘M3C’, ‘sylly.de’, ‘sylly.es’, ‘INLA’, ‘ComplexHeatmap’, ‘RandomFields’, ‘cairoDevice’, ‘RGtk2’, ‘snpStats’, ‘SwarmSVM’, ‘sangerseqR’, ‘ExactData’, ‘IRanges’, ‘RDCOMClient’, ‘gurobi’, ‘rrelaxiv’, ‘RTCGA.rnaseq’, ‘pageviews’, ‘rhdf5’, ‘mixOmics’, ‘genefilter’, ‘sva’, ‘Icens’, ‘mosaicCalc’ are not available
ubuntu-latest (release)
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘TreeDistData’, ‘Rgraphviz’ are not available
ubuntu-latest (devel)
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘bigQueryR’, ‘Biobase’, ‘MassSpecWavelet’, ‘marray’, ‘affy’, ‘limma’, ‘starsdata’, ‘BiocVersion’, ‘ganalytics’, ‘BiocParallel’, ‘spDataLarge’, ‘Rcgmin’, ‘Rvmmin’, ‘Rgraphviz’, ‘rnaturalearthhires’, ‘Rcampdf’, ‘tm.lexicon.GeneralInquirer’, ‘cmdstanr’, ‘glmmADMB’, ‘globaltest’, ‘taxidata’, ‘biomaRt’, ‘KEGGgraph’, ‘M3C’, ‘sylly.de’, ‘sylly.es’, ‘INLA’, ‘ComplexHeatmap’, ‘RandomFields’, ‘cairoDevice’, ‘RGtk2’, ‘snpStats’, ‘SwarmSVM’, ‘sangerseqR’, ‘ExactData’, ‘IRanges’, ‘RDCOMClient’, ‘gurobi’, ‘rrelaxiv’, ‘RTCGA.rnaseq’, ‘pageviews’, ‘rhdf5’, ‘mixOmics’, ‘genefilter’, ‘sva’, ‘Icens’, ‘mosaicCalc’ are not available
ubuntu-latest (devel)
no DISPLAY variable so Tk is not available
ubuntu-latest (devel)
no DISPLAY variable so Tk is not available
ubuntu-latest (devel)
no DISPLAY variable so Tk is not available
ubuntu-latest (devel)
no DISPLAY variable so Tk is not available
ubuntu-latest (devel)
no DISPLAY variable so Tk is not available
ubuntu-latest (devel)
no DISPLAY variable so Tk is not available
ubuntu-latest (devel)
no DISPLAY variable so Tk is not available
ubuntu-latest (devel)
Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
ubuntu-latest (devel)
Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 35 at (1)