Update vignettes to use ReadMrBayesTrees()
#287
Triggered via pull request
February 23, 2024 14:30
Status
Failure
Total duration
6h 0m 28s
Artifacts
–
Annotations
6 errors and 24 warnings
ubuntu-latest (release)
Build process failed
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ubuntu-latest (release)
Process completed with exit code 1.
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ubuntu-latest (release)
package or namespace load failed for ‘Hmisc’ in dyn.load(file, DLLpath = DLLpath, ...):
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ubuntu-latest (release)
package or namespace load failed for ‘stringr’ in dyn.load(file, DLLpath = DLLpath, ...):
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ubuntu-latest (devel)
The job running on runner GitHub Actions 20 has exceeded the maximum execution time of 360 minutes.
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ubuntu-latest (devel)
The operation was canceled.
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windows-latest (release)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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windows-latest (release)
dependencies 'graph', 'Biostrings', 'seqLogo', 'bigQueryR', 'Biobase', 'MassSpecWavelet', 'marray', 'affy', 'limma', 'starsdata', 'BiocVersion', 'ganalytics', 'BiocParallel', 'spDataLarge', 'unix', 'Rcgmin', 'Rvmmin', 'Rgraphviz', 'rnaturalearthhires', 'doMC', 'Rcampdf', 'Rpoppler', 'tm.lexicon.GeneralInquirer', 'cmdstanr', 'glmmADMB', 'globaltest', 'taxidata', 'biomaRt', 'KEGGgraph', 'M3C', 'sylly.de', 'sylly.es', 'rsyslog', 'INLA', 'ComplexHeatmap', 'RandomFields', 'cairoDevice', 'RGtk2', 'snpStats', 'SwarmSVM', 'sangerseqR', 'ExactData', 'IRanges', 'RDCOMClient', 'gurobi', 'rrelaxiv', 'RTCGA.rnaseq', 'pageviews', 'rhdf5', 'mixOmics', 'genefilter', 'sva', 'Icens', 'mosaicCalc' are not available
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windows-latest (release)
dependencies 'graph', 'Biostrings', 'seqLogo', 'TreeDistData', 'Rgraphviz' are not available
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windows-latest (release)
cannot remove prior installation of package 'cli'
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windows-latest (release)
restored 'cli'
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macOS-latest (release)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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macOS-latest (release)
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘bigQueryR’, ‘Biobase’, ‘MassSpecWavelet’, ‘marray’, ‘affy’, ‘limma’, ‘starsdata’, ‘BiocVersion’, ‘ganalytics’, ‘BiocParallel’, ‘spDataLarge’, ‘Rcgmin’, ‘Rvmmin’, ‘Rgraphviz’, ‘rnaturalearthhires’, ‘Rcampdf’, ‘tm.lexicon.GeneralInquirer’, ‘cmdstanr’, ‘glmmADMB’, ‘globaltest’, ‘taxidata’, ‘biomaRt’, ‘KEGGgraph’, ‘M3C’, ‘sylly.de’, ‘sylly.es’, ‘INLA’, ‘ComplexHeatmap’, ‘RandomFields’, ‘cairoDevice’, ‘RGtk2’, ‘snpStats’, ‘SwarmSVM’, ‘sangerseqR’, ‘ExactData’, ‘IRanges’, ‘RDCOMClient’, ‘gurobi’, ‘rrelaxiv’, ‘RTCGA.rnaseq’, ‘pageviews’, ‘rhdf5’, ‘mixOmics’, ‘genefilter’, ‘sva’, ‘Icens’, ‘mosaicCalc’ are not available
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macOS-latest (release)
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘TreeDistData’, ‘Rgraphviz’ are not available
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ubuntu-20.04 (4.1)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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ubuntu-20.04 (4.1)
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘bigQueryR’, ‘Biobase’, ‘MassSpecWavelet’, ‘marray’, ‘affy’, ‘limma’, ‘OpenStreetMap’, ‘starsdata’, ‘BiocVersion’, ‘ganalytics’, ‘BiocParallel’, ‘spDataLarge’, ‘MuMIn’, ‘estimability’, ‘Rcgmin’, ‘Rvmmin’, ‘Rgraphviz’, ‘VGAMextra’, ‘rnaturalearthhires’, ‘Rcampdf’, ‘tm.lexicon.GeneralInquirer’, ‘bayesQR’, ‘cmdstanr’, ‘piecewiseSEM’, ‘glmmADMB’, ‘globaltest’, ‘taxidata’, ‘biomaRt’, ‘KEGGgraph’, ‘M3C’, ‘sylly.de’, ‘sylly.es’, ‘INLA’, ‘ComplexHeatmap’, ‘RandomFields’, ‘cairoDevice’, ‘RGtk2’, ‘snpStats’, ‘DescTools’, ‘SwarmSVM’, ‘sangerseqR’, ‘ExactData’, ‘IRanges’, ‘gurobi’, ‘rrelaxiv’, ‘RTCGA.rnaseq’, ‘pageviews’, ‘rhdf5’, ‘mixOmics’, ‘genefilter’, ‘sva’, ‘Icens’, ‘mosaicCalc’, ‘bnlearn’ are not available
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ubuntu-20.04 (4.1)
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘TreeDistData’, ‘multiplex’ are not available
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ubuntu-latest (release)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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ubuntu-latest (release)
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘bigQueryR’, ‘Biobase’, ‘MassSpecWavelet’, ‘marray’, ‘affy’, ‘limma’, ‘starsdata’, ‘BiocVersion’, ‘ganalytics’, ‘BiocParallel’, ‘spDataLarge’, ‘Rcgmin’, ‘Rvmmin’, ‘Rgraphviz’, ‘rnaturalearthhires’, ‘Rcampdf’, ‘tm.lexicon.GeneralInquirer’, ‘cmdstanr’, ‘glmmADMB’, ‘globaltest’, ‘taxidata’, ‘biomaRt’, ‘KEGGgraph’, ‘M3C’, ‘sylly.de’, ‘sylly.es’, ‘INLA’, ‘ComplexHeatmap’, ‘RandomFields’, ‘cairoDevice’, ‘RGtk2’, ‘snpStats’, ‘SwarmSVM’, ‘sangerseqR’, ‘ExactData’, ‘IRanges’, ‘RDCOMClient’, ‘gurobi’, ‘rrelaxiv’, ‘RTCGA.rnaseq’, ‘pageviews’, ‘rhdf5’, ‘mixOmics’, ‘genefilter’, ‘sva’, ‘Icens’, ‘mosaicCalc’ are not available
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ubuntu-latest (release)
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘TreeDistData’, ‘Rgraphviz’ are not available
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ubuntu-latest (devel)
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘bigQueryR’, ‘Biobase’, ‘MassSpecWavelet’, ‘marray’, ‘affy’, ‘limma’, ‘starsdata’, ‘BiocVersion’, ‘ganalytics’, ‘BiocParallel’, ‘spDataLarge’, ‘Rcgmin’, ‘Rvmmin’, ‘Rgraphviz’, ‘rnaturalearthhires’, ‘Rcampdf’, ‘tm.lexicon.GeneralInquirer’, ‘cmdstanr’, ‘glmmADMB’, ‘globaltest’, ‘taxidata’, ‘biomaRt’, ‘KEGGgraph’, ‘M3C’, ‘sylly.de’, ‘sylly.es’, ‘INLA’, ‘ComplexHeatmap’, ‘RandomFields’, ‘cairoDevice’, ‘RGtk2’, ‘snpStats’, ‘SwarmSVM’, ‘sangerseqR’, ‘ExactData’, ‘IRanges’, ‘RDCOMClient’, ‘gurobi’, ‘rrelaxiv’, ‘RTCGA.rnaseq’, ‘pageviews’, ‘rhdf5’, ‘mixOmics’, ‘genefilter’, ‘sva’, ‘Icens’, ‘mosaicCalc’ are not available
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ubuntu-latest (devel)
no DISPLAY variable so Tk is not available
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ubuntu-latest (devel)
no DISPLAY variable so Tk is not available
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ubuntu-latest (devel)
no DISPLAY variable so Tk is not available
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ubuntu-latest (devel)
no DISPLAY variable so Tk is not available
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ubuntu-latest (devel)
no DISPLAY variable so Tk is not available
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ubuntu-latest (devel)
no DISPLAY variable so Tk is not available
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ubuntu-latest (devel)
no DISPLAY variable so Tk is not available
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ubuntu-latest (devel)
Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
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ubuntu-latest (devel)
Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 35 at (1)
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