fixing snapshot and names

mskcc-omics-workflows · Aug 6, 2024 · 07387e8 · 07387e8
1 parent e917939
commit 07387e8
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Showing 3 changed files with 13 additions and 13 deletions.
diff --git a/modules/msk/igv/snapshot/meta.yml b/modules/msk/igv/snapshot/meta.yml
@@ -1,6 +1,6 @@
 ---
 # yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/meta-schema.json
-name: "IGV_SNAPSHOT"
+name: "igv_snapshot"
 description: a module to run IGV screenshot
 keywords:
   - sort

diff --git a/modules/msk/igv/snapshot/tests/main.nf.test b/modules/msk/igv/snapshot/tests/main.nf.test
@@ -8,7 +8,7 @@ nextflow_process {
     tag "modules_nfcore"
     tag "modules_msk"
     tag "igv"
-    tag "igv_snapshot"
+    tag "igv/snapshot"
 
     test("chr22 - bam, vcf") {
 
@@ -35,7 +35,7 @@ nextflow_process {
 
     }
 
-    test("sarscov2 - bam - stub") {
+    test("chr22 - bam, vcf - stub") {
 
         options "-stub"
 

diff --git a/modules/msk/igv/snapshot/tests/main.nf.test.snap b/modules/msk/igv/snapshot/tests/main.nf.test.snap
@@ -1,5 +1,5 @@
 {
-    "sarscov2 - bam - stub": {
+    "chr22 - bam, vcf - stub": {
         "content": [
             {
                 "0": [
@@ -14,9 +14,9 @@
                     ]
                 ],
                 "1": [
-                    "versions.yml:md5,d28e665acecc254b456b2d904fea3021"
+                    "versions.yml:md5,870a90d9f64f5a5f5ec4cd474d69027c"
                 ],
-                "bam": [
+                "igv_screenshots": [
                     [
                         {
                             "id": "C-9M47TU-L001-d"
@@ -28,13 +28,13 @@
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,d28e665acecc254b456b2d904fea3021"
+                    "versions.yml:md5,870a90d9f64f5a5f5ec4cd474d69027c"
                 ]
             }
         ],
-        "timestamp": "2024-08-06T16:13:42.379642"
+        "timestamp": "2024-08-06T17:08:44.477177"
     },
-    "sarscov2 - bam": {
+    "chr22 - bam, vcf": {
         "content": [
             {
                 "0": [
@@ -54,9 +54,9 @@
                     ]
                 ],
                 "1": [
-                    "versions.yml:md5,d28e665acecc254b456b2d904fea3021"
+                    "versions.yml:md5,870a90d9f64f5a5f5ec4cd474d69027c"
                 ],
-                "bam": [
+                "igv_screenshots": [
                     [
                         {
                             "id": "C-9M47TU-L001-d"
@@ -73,10 +73,10 @@
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,d28e665acecc254b456b2d904fea3021"
+                    "versions.yml:md5,870a90d9f64f5a5f5ec4cd474d69027c"
                 ]
             }
         ],
-        "timestamp": "2024-08-06T16:09:30.976474"
+        "timestamp": "2024-08-06T17:08:31.32318"
     }
 }