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Command 'sickle' not found, but can be installed with: sudo apt install sickle
Here is my env:
var3) ubuntu@ip-172-31-20-167:~$ mamba list # packages in environment at /home/ubuntu/miniconda3/envs/var3: # # Name Version Build Channel _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_gnu conda-forge bcftools 1.9 h68d8f2e_9 bioconda biopython 1.70 np112py35_1 bioconda blas 1.1 openblas conda-forge bwa 0.7.17 h7132678_9 bioconda bzip2 1.0.8 h7f98852_4 conda-forge ca-certificates 2022.9.24 ha878542_0 conda-forge certifi 2018.8.24 py35_1001 conda-forge curl 7.64.0 h646f8bb_0 conda-forge freetype 2.12.1 hca18f0e_0 conda-forge gsl 2.5 h294904e_1 conda-forge htslib 1.9 ha228f0b_7 bioconda icu 70.1 h27087fc_0 conda-forge jpeg 9e h166bdaf_2 conda-forge krb5 1.16.3 hc83ff2d_1000 conda-forge libblas 3.9.0 1_h86c2bf4_netlib conda-forge libcblas 3.9.0 5_h92ddd45_netlib conda-forge libcurl 7.64.0 h01ee5af_0 conda-forge libdeflate 1.0 h14c3975_1 bioconda libedit 3.1.20191231 h46ee950_2 conda-forge libffi 3.2.1 he1b5a44_1007 conda-forge libgcc-ng 12.2.0 h65d4601_19 conda-forge libgfortran 3.0.0 1 conda-forge libgfortran-ng 12.2.0 h69a702a_19 conda-forge libgfortran5 12.2.0 h337968e_19 conda-forge libgomp 12.2.0 h65d4601_19 conda-forge libiconv 1.17 h166bdaf_0 conda-forge libnsl 2.0.0 h7f98852_0 conda-forge libpng 1.6.38 h753d276_0 conda-forge libssh2 1.8.0 h1ad7b7a_1003 conda-forge libstdcxx-ng 12.2.0 h46fd767_19 conda-forge libtiff 4.2.0 hf544144_3 conda-forge libwebp-base 1.2.4 h166bdaf_0 conda-forge libxml2 2.10.3 h7463322_0 conda-forge libxslt 1.1.37 h873f0b0_0 conda-forge libzlib 1.2.13 h166bdaf_4 conda-forge lxml 4.2.5 py35hc9114bc_0 conda-forge mmtf-python 1.0.2 py35_0 bioconda msgpack-python 0.5.6 py35h2d50403_3 conda-forge ncurses 6.1 hf484d3e_1002 conda-forge numpy 1.12.1 py35_blas_openblas_201 conda-forge olefile 0.46 pyh9f0ad1d_1 conda-forge openblas 0.2.20 8 conda-forge openssl 1.0.2u h516909a_0 conda-forge perl 5.32.1 2_h7f98852_perl5 conda-forge pillow 5.3.0 py35hc736899_0 conda-forge pip 20.3.4 pyhd8ed1ab_0 conda-forge python 3.5.5 h5001a0f_2 conda-forge readline 7.0 hf8c457e_1001 conda-forge reportlab 3.5.8 py35h77bcf2c_0 conda-forge requests 2.13.0 py35_0 conda-forge samtools 1.9 h10a08f8_12 bioconda setuptools 40.4.3 py35_0 conda-forge sickle 0.7.0 pyh9f0ad1d_0 bioconda sqlite 3.28.0 h8b20d00_0 conda-forge tk 8.6.12 h27826a3_0 conda-forge wheel 0.37.1 pyhd8ed1ab_0 conda-forge xz 5.2.6 h166bdaf_0 conda-forge zlib 1.2.13 h166bdaf_4 conda-forge zstd 1.5.2 h6239696_4 conda-forge (var3) ubuntu@ip-172-31-20-167:~$ mamba lsickle No command 'conda lsickle'.
The text was updated successfully, but these errors were encountered:
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Command 'sickle' not found, but can be installed with:
sudo apt install sickle
Here is my env:
The text was updated successfully, but these errors were encountered: