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Releases: ncborcherding/escape

v2.2.3

24 Jan 20:32
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UNDERLYING CHANGES

  • fixed handling of groups parameter and data splitting in ````escape.matrix()```
  • improved efficiency of internal .split_data.matrix()
  • fix ```performNormalization()```` conditional statements
  • fix performNormalization() rescaling for per gene set calculations

v2.2.1

04 Nov 18:52
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escape VERSION 2.2.1

UNDERLYING CHANGES

  • update handling of v5 Seurat versus <v5 Seurat Objects
  • added mean and median visualization for heatmapEnrichment()
  • update densityEnrichment() GSVA function pull
  • Parallelization of performNormalization()
  • Refactor of getGeneSets() to prevent issues with m_df error.
  • fixed performNormalization() errors when input.data was a matrix, now requires single-cell object and enrichment data
  • passing parallel processing properly to runEscape() function.
  • ordering by mean values no longer changes the color order
  • add explicit BPPARAM argument to runEscape() and escape.matrix()
  • added additional details in runEscape() and escape.matrix() for make.positive.
  • removed plotting of splitEnrichment() for group.by = NULL
  • separated AUC calculation to rankings and AUC, this was only method found to get consistent scores.