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run validation pipelines in azure using github action
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Signed-off-by: Jorge Aguilera <[email protected]>
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jagedn committed Aug 29, 2024
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Expand Up @@ -73,7 +73,6 @@ fi

if [ "$NFGHACTION" == 1 ]; then
cd ~/integration-tests/az-nomadlab; NXF_ASSETS=/projects/assets nextflow run hello -w /projects/ -c nextflow.config
cd ~/integration-tests/az-nomadlab; NXF_ASSETS=/projects/assets nextflow run hello -w /projects/ -c 2-volumes.config
cd ~/integration-tests/az-nomadlab; NXF_ASSETS=/projects/assets nextflow run bactopia/bactopia -c nextflow.config -w /projects -profile test,docker --outdir /projects/bactopia/outdir --accession SRX4563634 --coverage 100 --genome_size 2800000 --datasets_cache /projects/bactopia/datasets
else
echo "skip ghaction"
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