prettier

docs/basic_training/channels.md

@@ -201,7 +201,6 @@ As you can see, the output is the same as the previous example when the `first()
         }
         ```
 
-
 !!! cboard-list-2 "Summary"
 
     In this step you have learned:

docs/basic_training/containers.md

@@ -416,7 +416,6 @@ The authors of Singularity, [SyLabs](https://www.sylabs.io/) have their own repo
 
 In the same way that we can push Docker images to Docker Hub, we can upload Singularity images to the Singularity Library.
 
-
 !!! cboard-list-2 "Summary"
 
     In this step you have learned:
@@ -448,7 +447,7 @@ There is already a file named `env.yml` in the `nf-training` folder as an exampl
 --8<-- "nf-training/env.yml"
 ```
 
-Given the `env.yml` recipe file, the environment can be created using the command shown below. 
+Given the `env.yml` recipe file, the environment can be created using the command shown below.
 
 ```bash
 conda env create --file env.yml
@@ -550,7 +549,7 @@ The above `Dockerfile` takes the parent image _mambaorg/micromamba_, installs a
         ```
 
         Build the image:
-        
+
         ```bash
         docker build -t my-image .`
         ```
@@ -568,7 +567,7 @@ The above `Dockerfile` takes the parent image _mambaorg/micromamba_, installs a
         `my-image` can be replaced with any name you choose. As good practice, choose something memorable and ensure the name matches the name you used in the previous command.
 
         Add the container image name to the `nextflow.config` file.
-        
+
         e.g. remove the following from the `nextflow.config`:
 
         ```groovy
@@ -642,7 +641,6 @@ mulled-search --destination quay singularity --channel bioconda --search bowtie
     1. What Biocontainers are and where to find them
     2. How to use Biocontainers in your Nextflow workflow
 
-
 ## Software directives
 
 Directives are optional settings that affect the execution of the current process.
@@ -683,8 +681,8 @@ Nextflow automatically sets up an environment for the given package names listed
 
     ??? Solution
 
-        Add the container directive with the appropriate BioContainers to the `FASTQC` and `QUANTIFICATION` processes in `script5.nf`:      
-        
+        Add the container directive with the appropriate BioContainers to the `FASTQC` and `QUANTIFICATION` processes in `script5.nf`:
+
         ```groovy
         process FASTQC {
             container 'biocontainers/fastqc:v0.11.5'
@@ -716,4 +714,3 @@ Nextflow automatically sets up an environment for the given package names listed
     In this step you have learned:
 
     1. How to add software with directives.
-

docs/basic_training/operators.md

@@ -710,7 +710,6 @@ Nextflow will use this as a custom function within the workflow scope.
 
     You will learn more about module files later in the [Modularization section](../modules/) of this tutorial.
 
-
 ## More resources
 
 Check the [operators documentation](https://www.nextflow.io/docs/latest/operator.html) on Nextflow web site.

docs/basic_training/processes.md

@@ -225,7 +225,7 @@ params.compress = 'gzip'
 params.file2compress = "$baseDir/data/ggal/transcriptome.fa"
 
 process FOO {
-    debug true 
+    debug true
 
     input:
     path file
@@ -347,7 +347,7 @@ workflow {
 }
 ```
 
-In this case, the process is executed six times and will print the name of the file `sample.fastq` six times as this is the name of the file in the input declaration and despite the input file name being different in each execution (e.g., `lung_1.fq`). 
+In this case, the process is executed six times and will print the name of the file `sample.fastq` six times as this is the name of the file in the input declaration and despite the input file name being different in each execution (e.g., `lung_1.fq`).
 
 ```console title="Output"
 sample.fastq
@@ -380,7 +380,7 @@ workflow {
 }
 ```
 
-In this case, the process is executed six times and will print the name of the variable input file six times (e.g., `lung_1.fq`). 
+In this case, the process is executed six times and will print the name of the variable input file six times (e.g., `lung_1.fq`).
 
 ```console title="Output"
 lung_1.fq