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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    Python 1.4k 403

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 269 128

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 296 163

Repositories

Showing 10 of 94 repositories
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 269 AGPL-3.0 128 223 (1 issue needs help) 35 Updated Jan 25, 2025
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu’s past year of commit activity
    Python 46 27 23 2 Updated Jan 25, 2025
  • WNV Public

    the repository used to build West Nile Virus for nextstrain

    nextstrain/WNV’s past year of commit activity
    Python 3 0 6 2 Updated Jan 24, 2025
  • ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    nextstrain/ncov’s past year of commit activity
    Python 1,353 MIT 403 72 22 Updated Jan 24, 2025
  • fauna Public

    RethinkDB database to support real-time virus analysis

    nextstrain/fauna’s past year of commit activity
    Python 33 AGPL-3.0 13 20 11 Updated Jan 24, 2025
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org’s past year of commit activity
    JavaScript 93 AGPL-3.0 49 68 9 Updated Jan 25, 2025
  • nextclade Public

    Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

    nextstrain/nextclade’s past year of commit activity
    Rust 223 MIT 61 111 (32 issues need help) 20 Updated Jan 24, 2025
  • ncov-ingest Public

    A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.

    nextstrain/ncov-ingest’s past year of commit activity
    Python 36 MIT 20 31 8 Updated Jan 23, 2025
  • status Public

    Nextstrain status pages

    nextstrain/status’s past year of commit activity
    Go 1 MIT 0 2 1 Updated Jan 23, 2025
  • steampipe-plugin-github Public Forked from turbot/steampipe-plugin-github
    nextstrain/steampipe-plugin-github’s past year of commit activity
    Go 0 Apache-2.0 32 0 0 Updated Jan 23, 2025
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