Merge pull request #811 from JohannesKersting/update_daisybio

update daisybio profile: use group of the launch directory for work directory

conf/daisybio.config

@@ -11,7 +11,17 @@ params {
 // define workDir in /nfs/scratch/nf-core_work/ named after the launch dir
 def work_dir = "/nfs/scratch/nf-core_work/"
 if(new File(work_dir).exists() && System.getenv("PWD")) {
-        workDir = work_dir+System.getenv("PWD").tokenize('/').join('.')
+    work_dir = work_dir+System.getenv("PWD").tokenize('/').join('.')
+    workDir = work_dir
+
+    // if directory does not exist, create it and set the group to the group launch dir
+    if(!new File(work_dir).exists()) {
+        "mkdir -p ${work_dir}".execute()
+        def pwd = System.getenv("PWD")
+        def group = "stat -c %g ${pwd}".execute().text.trim()
+        "chgrp -R ${group} ${work_dir}".execute()
+        "chmod -R g+s ${work_dir}".execute()
+    }
 }
 
 process {