Merge pull request #823 from ggrimes/patch-9

Update eddie.config singularity runtime options
nf-core · Jan 15, 2025 · 6440c0a · 6440c0a
2 parents 15892ce + 1f63e48
commit 6440c0a
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/conf/eddie.config b/conf/eddie.config
@@ -46,7 +46,7 @@ env {
 
 singularity {
     envWhitelist = "SINGULARITY_TMPDIR,TMPDIR"
-    runOptions   = '-p -B "$TMPDIR"'
+    runOptions   = '-p --scratch /dev/shm -B "$TMPDIR"'
     enabled      = true
     autoMounts   = true
     cacheDir     = "/exports/igmm/eddie/BioinformaticsResources/nfcore/singularity-images"