Merge pull request #122 from nf-core/olgabot-patch-1-1

Output all informational BAM tags to fastq
nf-core · Jan 6, 2021 · b4afeca · b4afeca
2 parents 6fbbc1d + 67bdaea
commit b4afeca
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/nextflow.config b/nextflow.config
@@ -21,7 +21,7 @@ params {
 
   // Parsing 10x bam files
   tenx_tgz = false
-  tenx_tags = "CB,XC,UB,XM,XB,RG,GN,GX,TX"
+  tenx_tags = "CB,CR,CY,XC,UB,UR,UY,AN,TR,XM,XB,RG,GN,GX,TX,NH,HI,AS,nM,RE,MM,pa,xf,fb,fr,fq,fx"
   tenx_cell_barcode_pattern = '(CB|XC):Z:([ACGT]+)(\\-1)?'
   tenx_molecular_barcode_pattern = '(UB|XB|XM):Z:([ACGT]+)'
   tenx_min_umi_per_cell = 0