Fixes to run in July 2022#152

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olgabot wants to merge 16 commits intodevfrom olgabot/2022-jul--dsl-fixes

+472-427

Commits on Jul 8, 2022

Fixes to run in July 2022
olgabot
authored
More set -> into
olgabot
authored
Use DSL2
olgabot
authored
only one item for set
Olga Botvinnik
committed
single ch_ksizes_for_compare
Olga Botvinnik
committed

Commits on Sep 7, 2022

Got up to sourmash sketch compute -- fixing 'No such variable: ch_reads_for_ribosomal_removal'
Olga Botvinnik
committed
Fixed ribosomal reads -- fixing 'No such variable: sourmash_sketches_nucleotide'
Olga Botvinnik
committed
seems to be running? -- fixing 'Missing process or function with name 'splitText''
Olga Botvinnik
committed
seems to be running? -- fixing 'Missing process or function with name 'splitText''
Olga Botvinnik
committed
fastp seems to work, fixing Input of type '!'=27174
Olga Botvinnik
committed
seems to be running!!!
Olga Botvinnik
committed
clean up some commented code
Olga Botvinnik
committed
change the item index to check file size of signature
Olga Botvinnik
committed

Commits on Sep 8, 2022

Change default ksizes 21,30,51 -> 21,33,51 so that they are still odd for DNA
Olga Botvinnik
committed
Compute one signature per ksize
Olga Botvinnik
committed
Fix call to ksizes using "each"
Olga Botvinnik
committed