Fixed tags for nf-core modules

nf-core · Jan 17, 2024 · 319142c · 319142c
1 parent a3c984a
commit 319142c
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Showing 3 changed files with 27 additions and 27 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -90,7 +90,7 @@ jobs:
 
       - name: Run nf-test
         run: |
-          nf-test test --tag mag_${{ matrix.tags }} --profile ${{ matrix.tags }},${{ matrix.profile }},test_data --junitxml=test.xml
+          nf-test test --tag ${{ matrix.tags }} --profile ${{ matrix.tags }},${{ matrix.profile }},test_data --junitxml=test.xml
 
       - name: Output log on failure
         if: failure()

diff --git a/nextflow.config b/nextflow.config
@@ -306,21 +306,21 @@ profiles {
         executor.cpus          = 4
         executor.memory        = 8.GB
     }
-    test_data           { includeConfig 'conf/test_data.config'           }
-    test                { includeConfig 'conf/test.config'                }
-    test_full           { includeConfig 'conf/test_full.config'           }
-    test_host_rm        { includeConfig 'conf/test_host_rm.config'        }
-    test_hybrid         { includeConfig 'conf/test_hybrid.config'         }
-    test_hybrid_host_rm { includeConfig 'conf/test_hybrid_host_rm.config' }
-    test_busco_auto     { includeConfig 'conf/test_busco_auto.config'     }
-    test_ancient_dna    { includeConfig 'conf/test_ancient_dna.config'    }
-    test_adapterremoval { includeConfig 'conf/test_adapterremoval.config' }
-    test_binning_entry  { includeConfig 'conf/test_binning_entry.config'  }
-    test_binrefinement  { includeConfig 'conf/test_binrefinement.config'  }
-    test_no_clipping    { includeConfig 'conf/test_no_clipping.config'    }
-    test_bbnorm         { includeConfig 'conf/test_bbnorm.config'         }
-    test_nothing        { includeConfig 'conf/test_nothing.config'        }
-    test_virus_identification { includeConfig 'conf/test_virus_identification.config' }
+    test_data                       { includeConfig 'conf/test_data.config'                 }
+    mag_test                        { includeConfig 'conf/test.config'                      }
+    mag_test_full                   { includeConfig 'conf/test_full.config'                 }
+    mag_test_host_rm                { includeConfig 'conf/test_host_rm.config'              }
+    mag_test_hybrid                 { includeConfig 'conf/test_hybrid.config'               }
+    mag_test_hybrid_host_rm         { includeConfig 'conf/test_hybrid_host_rm.config'       }
+    mag_test_busco_auto             { includeConfig 'conf/test_busco_auto.config'           }
+    mag_test_ancient_dna            { includeConfig 'conf/test_ancient_dna.config'          }
+    mag_test_adapterremoval         { includeConfig 'conf/test_adapterremoval.config'       }
+    mag_test_binning_entry          { includeConfig 'conf/test_binning_entry.config'        }
+    mag_test_binrefinement          { includeConfig 'conf/test_binrefinement.config'        }
+    mag_test_no_clipping            { includeConfig 'conf/test_no_clipping.config'          }
+    mag_test_bbnorm                 { includeConfig 'conf/test_bbnorm.config'               }
+    mag_test_nothing                { includeConfig 'conf/test_nothing.config'              }
+    mag_test_virus_identification   { includeConfig 'conf/test_virus_identification.config' }
 }
 
 // Set default registry for Apptainer, Docker, Podman and Singularity independent of -profile

diff --git a/workflows/mag/tests/tags.yml b/workflows/mag/tests/tags.yml
@@ -1,22 +1,22 @@
-test_adapterremoval:
+mag_test_adapterremoval:
   - ./**
-test_ancient_dna:
+mag_test_ancient_dna:
   - ./**
-test_bbnorm:
+mag_test_bbnorm:
   - ./**
-test_binrefinement:
+mag_test_binrefinement:
   - ./**
-test_busco_auto:
+mag_test_busco_auto:
   - ./**
-test_host_rm:
+mag_test_host_rm:
   - ./**
-test_hybrid_host_rm:
+mag_test_hybrid_host_rm:
   - ./**
-test_hybrid:
+mag_test_hybrid:
   - ./**
-test_nothing:
+mag_test_nothing:
   - ./**
-test_virus_identification:
+mag_test_virus_identification:
   - ./**
-test:
+mag_test:
   - ./**