Fix BUSCO download links due to deprecation of old verison of db in t…

…ests
nf-core · Jan 16, 2024 · c2f44fe · c2f44fe
1 parent c66ed48
commit c2f44fe
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Showing 8 changed files with 8 additions and 8 deletions.
diff --git a/conf/test.config b/conf/test.config
@@ -26,7 +26,7 @@ params {
     skip_krona                    = true
     min_length_unbinned_contigs   = 1
     max_unbinned_contigs          = 2
-    busco_db                      = "https://busco-data.ezlab.org/v5/data/lineages/bacteria_odb10.2020-03-06.tar.gz"
+    busco_db                      = "https://busco-data.ezlab.org/v5/data/lineages/bacteria_odb10.2024-01-08.tar.gz"
     busco_clean                   = true
     skip_gtdbtk                   = true
     skip_concoct                  = true

diff --git a/conf/test_adapterremoval.config b/conf/test_adapterremoval.config
@@ -27,7 +27,7 @@ params {
     skip_krona                  = true
     min_length_unbinned_contigs = 1
     max_unbinned_contigs        = 2
-    busco_db                    = "https://busco-data.ezlab.org/v5/data/lineages/bacteria_odb10.2020-03-06.tar.gz"
+    busco_db                    = "https://busco-data.ezlab.org/v5/data/lineages/bacteria_odb10.2024-01-08.tar.gz"
     skip_gtdbtk                 = true
     clip_tool                   = 'adapterremoval'
     skip_concoct                = true

diff --git a/conf/test_ancient_dna.config b/conf/test_ancient_dna.config
@@ -26,7 +26,7 @@ params {
     skip_krona                           = true
     min_length_unbinned_contigs          = 1
     max_unbinned_contigs                 = 2
-    busco_db                             = "https://busco-data.ezlab.org/v5/data/lineages/bacteria_odb10.2020-03-06.tar.gz"
+    busco_db                             = "https://busco-data.ezlab.org/v5/data/lineages/bacteria_odb10.2024-01-08.tar.gz"
     skip_gtdbtk                          = true
     ancient_dna                          = true
     binning_map_mode                     = 'own'

diff --git a/conf/test_bbnorm.config b/conf/test_bbnorm.config
@@ -32,7 +32,7 @@ params {
     skip_krona                    = true
     min_length_unbinned_contigs   = 1
     max_unbinned_contigs          = 2
-    busco_db                      = "https://busco-data.ezlab.org/v5/data/lineages/bacteria_odb10.2020-03-06.tar.gz"
+    busco_db                      = "https://busco-data.ezlab.org/v5/data/lineages/bacteria_odb10.2024-01-08.tar.gz"
     busco_clean                   = true
     skip_gtdbtk                   = true
     bbnorm                        = true

diff --git a/conf/test_binrefinement.config b/conf/test_binrefinement.config
@@ -27,7 +27,7 @@ params {
     skip_krona                    = true
     min_length_unbinned_contigs   = 1
     max_unbinned_contigs          = 2
-    busco_db                      = "https://busco-data.ezlab.org/v5/data/lineages/bacteria_odb10.2020-03-06.tar.gz"
+    busco_db                      = "https://busco-data.ezlab.org/v5/data/lineages/bacteria_odb10.2024-01-08.tar.gz"
     skip_gtdbtk                   = true
     refine_bins_dastool           = true
     refine_bins_dastool_threshold = 0

diff --git a/conf/test_host_rm.config b/conf/test_host_rm.config
@@ -24,7 +24,7 @@ params {
     input                       = 'https://raw.githubusercontent.com/nf-core/test-datasets/mag/samplesheets/samplesheet.host_rm.csv'
     min_length_unbinned_contigs = 1
     max_unbinned_contigs        = 2
-    busco_db                    = "https://busco-data.ezlab.org/v5/data/lineages/bacteria_odb10.2020-03-06.tar.gz"
+    busco_db                    = "https://busco-data.ezlab.org/v5/data/lineages/bacteria_odb10.2024-01-08.tar.gz"
     skip_gtdbtk                 = true
     skip_concoct                = true
 }
diff --git a/conf/test_hybrid.config b/conf/test_hybrid.config
@@ -23,7 +23,7 @@ params {
     input                       = 'https://raw.githubusercontent.com/nf-core/test-datasets/mag/samplesheets/samplesheet.hybrid.csv'
     min_length_unbinned_contigs = 1
     max_unbinned_contigs        = 2
-    busco_db                    = "https://busco-data.ezlab.org/v5/data/lineages/bacteria_odb10.2020-03-06.tar.gz"
+    busco_db                    = "https://busco-data.ezlab.org/v5/data/lineages/bacteria_odb10.2024-01-08.tar.gz"
     skip_gtdbtk                 = true
     skip_concoct                = true
 }
diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -763,7 +763,7 @@
                 "busco_db": {
                     "type": "string",
                     "description": "Download URL for BUSCO lineage dataset, or path to a tar.gz archive, or local directory containing already downloaded and unpacked lineage datasets.",
-                    "help_text": "E.g. https://busco-data.ezlab.org/v5/data/lineages/bacteria_odb10.2020-03-06.tar.gz or '/path/to/buscodb' (files still need to be unpacked manually). Available databases are listed here: https://busco-data.ezlab.org/v5/data/lineages/."
+                    "help_text": "E.g. https://busco-data.ezlab.org/v5/data/lineages/bacteria_odb10.2024-01-08.tar.gz or '/path/to/buscodb' (files still need to be unpacked manually). Available databases are listed here: https://busco-data.ezlab.org/v5/data/lineages/."
                 },
                 "busco_auto_lineage_prok": {
                     "type": "boolean",