Add chopper and nanoq options for longread preprocessing#692

Merged

muabnezor merged 18 commits intonf-core:devfrom muabnezor:add_chopper_nanoq

Nov 22, 2024

+964-30

Commits on Oct 14, 2024

install chopper from nf-core/chopper
muabnezor
committed
Add nanoq from nf-core/nanoq, and add code in longread_preprocessing subworkflow for alternative use of chopper for lambda-removal instead of nanolyse, and nanoq for longread filtering instead of f…
muabnezor
committed
Fix config for modules nanoq and filtlong in modules.config
muabnezor
committed

Commits on Oct 15, 2024

Make it possible to use chopper as filtering tool as well
muabnezor
committed

Commits on Oct 29, 2024

Merge branch 'dev' into add_chopper_nanoq
jfy133
authored

Commits on Nov 22, 2024