add gpu profile to config

nf-core · Dec 2, 2024 · 0b2f069 · 0b2f069
1 parent 231cbc3
commit 0b2f069
Showing 1 changed file with 11 additions and 0 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -221,6 +221,17 @@ profiles {
         executor.cpus           = 4
         executor.memory         = 8.GB
     }
+    docker_self_hosted {
+        docker.enabled      = true
+        docker.fixOwnership = true
+        docker.runOptions   = '--platform=linux/amd64'
+    }
+    gpu {
+        docker.runOptions       = '-u $(id -u):$(id -g) --gpus all'
+        apptainer.runOptions    = '--nv'
+        singularity.runOptions  = '--nv'
+        use_gpu                 = true
+    }
     test        { includeConfig 'conf/test.config'      }
     test_full   { includeConfig 'conf/test_full.config' }
     test_ci     { params.pipelines_testdata_base_path = './test-datasets/' }