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@ewels ewels released this 17 Apr 15:49
· 1377 commits to master since this release
1.0
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Learn about vigilant mode.

First release of this pipeline under the nf-core flag. It also marks a significant step up in the maturity of the workflow, with everything now in a single script and both aligner workflows fully supported.

  • Renamed and moved SciLifeLab/NGI-MethylSeq to nf-core/methylseq
  • Merged bwa-meth and bismark pipeline scripts, now chosen with --aligner flag
  • Refactored multi-core parameters for Bismark alignment and methylation extraction
  • Rewrote most of the documentation
  • Changed the Docker container to use Bioconda installations

For earlier releases and development notes, please see the (now archived) fork at SciLifeLab/NGI-MethylSeq.

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