test: Ignore MultiQC plots because of OSX ARM

MultiQC/MultiQC#2667
nf-core · Dec 19, 2024 · d4ad53b · d4ad53b
1 parent 72aa5f1
commit d4ad53b
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Showing 11 changed files with 11 additions and 10 deletions.
diff --git a/tests/.nftignore b/tests/.nftignore
@@ -10,6 +10,7 @@ multiqc/multiqc_data/rseqc_read_dups.txt
 multiqc/multiqc_data/multiqc_software_versions.txt
 multiqc/multiqc_data/multiqc_sources.txt
 multiqc/multiqc_report.html
+multiqc/multiqc_plots/**
 multiqc/multiqc_plots/{pdf,png,svg}/*.{pdf,png,svg}
 pipeline_info/*.{html,json,txt,yml}
 

diff --git a/workflows/tests/aligner/bowtie2.nf.test b/workflows/tests/aligner/bowtie2.nf.test
@@ -16,7 +16,7 @@ nextflow_pipeline {
 
         then {
             // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}', 'multiqc/multiqc_plots', 'multiqc/multiqc_plots/**'])
             // stable_path: All files in ${params.outdir}/ with stable content
             def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
             // bam_files: All bam files

diff --git a/workflows/tests/aligner/bwa.nf.test b/workflows/tests/aligner/bwa.nf.test
@@ -17,7 +17,7 @@ nextflow_pipeline {
 
         then {
             // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}', 'multiqc/multiqc_plots', 'multiqc/multiqc_plots/**'])
             // stable_path: All files in ${params.outdir}/ with stable content
             def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
             // bam_files: All bam files

diff --git a/workflows/tests/aligner/bwamem2.nf.test b/workflows/tests/aligner/bwamem2.nf.test
@@ -14,7 +14,7 @@ nextflow_pipeline {
 
         then {
             // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}', 'multiqc/multiqc_plots', 'multiqc/multiqc_plots/**'])
             // stable_path: All files in ${params.outdir}/ with stable content
             def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
             // bam_files: All bam files

diff --git a/workflows/tests/aligner/hisat2.nf.test b/workflows/tests/aligner/hisat2.nf.test
@@ -17,7 +17,7 @@ nextflow_pipeline {
 
         then {
             // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}', 'multiqc/multiqc_plots', 'multiqc/multiqc_plots/**'])
             // stable_path: All files in ${params.outdir}/ with stable content
             def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
             // bam_files: All bam files

diff --git a/workflows/tests/aligner/star.nf.test b/workflows/tests/aligner/star.nf.test
@@ -16,7 +16,7 @@ nextflow_pipeline {
 
         then {
             // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}', 'multiqc/multiqc_plots', 'multiqc/multiqc_plots/**'])
             // stable_path: All files in ${params.outdir}/ with stable content
             def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
             // bam_files: All bam files

diff --git a/workflows/tests/inputs/gff/main.nf.test b/workflows/tests/inputs/gff/main.nf.test
@@ -16,7 +16,7 @@ nextflow_pipeline {
 
         then {
             // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}', 'multiqc/multiqc_plots', 'multiqc/multiqc_plots/**'])
             // stable_path: All files in ${params.outdir}/ with stable content
             def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
             // bam_files: All bam files

diff --git a/workflows/tests/inputs/gzipped_gff/main.nf.test b/workflows/tests/inputs/gzipped_gff/main.nf.test
@@ -16,7 +16,7 @@ nextflow_pipeline {
 
         then {
             // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}', 'multiqc/multiqc_plots', 'multiqc/multiqc_plots/**'])
             // stable_path: All files in ${params.outdir}/ with stable content
             def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
             // bam_files: All bam files

diff --git a/workflows/tests/inputs/only_gff/main.nf.test b/workflows/tests/inputs/only_gff/main.nf.test
@@ -18,7 +18,7 @@ nextflow_pipeline {
 
         then {
             // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}', 'multiqc/multiqc_plots', 'multiqc/multiqc_plots/**'])
             // stable_path: All files in ${params.outdir}/ with stable content
             def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
             // bam_files: All bam files

diff --git a/workflows/tests/transcript_indentification/grohmm/only_gff/main.nf.test b/workflows/tests/transcript_indentification/grohmm/only_gff/main.nf.test
@@ -22,7 +22,7 @@ nextflow_pipeline {
 
         then {
             // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}', 'multiqc/multiqc_plots', 'multiqc/multiqc_plots/**'])
             // stable_path: All files in ${params.outdir}/ with stable content
             def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
             // bam_files: All bam files

diff --git a/workflows/tests/transcript_indentification/grohmm/tuning/main.nf.test b/workflows/tests/transcript_indentification/grohmm/tuning/main.nf.test
@@ -14,7 +14,7 @@ nextflow_pipeline {
 
         then {
             // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}', 'multiqc/multiqc_plots', 'multiqc/multiqc_plots/**'])
             // stable_path: All files in ${params.outdir}/ with stable content
             def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
             // bam_files: All bam files