Pulled dev

nf-core · Mar 18, 2024 · f2c30a8 · f2c30a8
1 parent 62b962f
commit f2c30a8
Show file tree

Hide file tree

Showing 29 changed files with 626 additions and 65 deletions.
diff --git a/modules.json b/modules.json
@@ -12,13 +12,8 @@
                     },
                     "bcftools/index": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
-                        "installed_by": [
-                            "multiple_impute_glimpse2",
-                            "modules",
-                            "vcf_impute_glimpse",
-                            "vcf_phase_shapeit5"
-                        ]
+                        "git_sha": "44096c08ffdbc694f5f92ae174ea0f7ba0f37e09",
+                        "installed_by": ["multiple_impute_glimpse2", "vcf_impute_glimpse", "vcf_phase_shapeit5"]
                     },
                     "bcftools/norm": {
                         "branch": "master",
@@ -52,17 +47,17 @@
                     },
                     "glimpse/chunk": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
-                        "installed_by": ["vcf_impute_glimpse", "modules"]
+                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
+                        "installed_by": ["vcf_impute_glimpse"]
                     },
                     "glimpse/ligate": {
                         "branch": "master",
-                        "git_sha": "36cfa4c2a7e538832c50f40cb16d159e84cd3305",
+                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
                         "installed_by": ["vcf_impute_glimpse"]
                     },
                     "glimpse/phase": {
                         "branch": "master",
-                        "git_sha": "36cfa4c2a7e538832c50f40cb16d159e84cd3305",
+                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
                         "installed_by": ["vcf_impute_glimpse"]
                     },
                     "glimpse2/chunk": {
@@ -140,29 +135,29 @@
                         "git_sha": "dedc0e31087f3306101c38835d051bf49789445a",
                         "installed_by": ["subworkflows"]
                     },
-                    "vcf_impute_glimpse": {
+                    "utils_nextflow_pipeline": {
                         "branch": "master",
-                        "git_sha": "74d79f1853c9ff2961e6061aad3c68d728d5c20d",
+                        "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
                         "installed_by": ["subworkflows"]
                     },
-                    "vcf_phase_shapeit5": {
+                    "utils_nfcore_pipeline": {
                         "branch": "master",
-                        "git_sha": "dedc0e31087f3306101c38835d051bf49789445a",
+                        "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
                         "installed_by": ["subworkflows"]
                     },
-                    "utils_nextflow_pipeline": {
+                    "utils_nfvalidation_plugin": {
                         "branch": "master",
                         "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
                         "installed_by": ["subworkflows"]
                     },
-                    "utils_nfcore_pipeline": {
+                    "vcf_impute_glimpse": {
                         "branch": "master",
-                        "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
+                        "git_sha": "8dab3bf2aaa912730419080e96d2a7d98911db48",
                         "installed_by": ["subworkflows"]
                     },
-                    "utils_nfvalidation_plugin": {
+                    "vcf_phase_shapeit5": {
                         "branch": "master",
-                        "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
+                        "git_sha": "dedc0e31087f3306101c38835d051bf49789445a",
                         "installed_by": ["subworkflows"]
                     }
                 }

diff --git a/modules/nf-core/bcftools/index/environment.yml b/modules/nf-core/bcftools/index/environment.yml
diff --git a/modules/nf-core/bcftools/index/main.nf b/modules/nf-core/bcftools/index/main.nf
diff --git a/modules/nf-core/bcftools/index/meta.yml b/modules/nf-core/bcftools/index/meta.yml
diff --git a/modules/nf-core/glimpse/chunk/environment.yml b/modules/nf-core/glimpse/chunk/environment.yml
diff --git a/modules/nf-core/glimpse/chunk/main.nf b/modules/nf-core/glimpse/chunk/main.nf
diff --git a/modules/nf-core/glimpse/chunk/meta.yml b/modules/nf-core/glimpse/chunk/meta.yml
diff --git a/modules/nf-core/glimpse/chunk/tests/main.nf.test b/modules/nf-core/glimpse/chunk/tests/main.nf.test
diff --git a/modules/nf-core/glimpse/chunk/tests/main.nf.test.snap b/modules/nf-core/glimpse/chunk/tests/main.nf.test.snap
diff --git a/modules/nf-core/glimpse/chunk/tests/nextflow.config b/modules/nf-core/glimpse/chunk/tests/nextflow.config
diff --git a/modules/nf-core/glimpse/chunk/tests/tags.yml b/modules/nf-core/glimpse/chunk/tests/tags.yml
diff --git a/modules/nf-core/glimpse/ligate/environment.yml b/modules/nf-core/glimpse/ligate/environment.yml
diff --git a/modules/nf-core/glimpse/ligate/main.nf b/modules/nf-core/glimpse/ligate/main.nf
diff --git a/modules/nf-core/glimpse/ligate/meta.yml b/modules/nf-core/glimpse/ligate/meta.yml