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Make genomic FASTA input optional #3267

Make genomic FASTA input optional

Make genomic FASTA input optional #3267

Triggered via pull request January 22, 2025 14:12
Status Failure
Total duration 20m 59s
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ci.yml

on: pull_request
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Run tests (subworkflows/local/prepare_genome/tests/main.nf.test docker NF-24.04.2)
Process completed with exit code 1.
Run tests (subworkflows/local/prepare_genome/tests/main.nf.test docker NF-24.04.2)
Process completed with exit code 1.
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ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (modules/local/gtf_filter/tests/main.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (modules/nf-core/salmon/index/tests/main.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (modules/nf-core/salmon/quant/tests/main.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/nofasta.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/salmon.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/kallisto.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/skip_qc.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/star_rsem.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/hisat2.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/default.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/skip_trimming.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/featurecounts_group_type.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (subworkflows/local/prepare_genome/tests/main.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/umi.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636