Skip to content
nf-core CI

Ensure pseudoaligner is set if pseudoalignment is not skipped #2053

Sign in to view logs

Ensure pseudoaligner is set if pseudoalignment is not skipped

Ensure pseudoaligner is set if pseudoalignment is not skipped #2053

Run time

Learn about OS pricing on GitHub Actions
Job Run time
Run pipeline with test data (23.04.0)
10m 53s
Run pipeline with test data (latest-everything)
11m 11s
Test HISAT2 with workflow parameters (--skip_qc)
5m 37s
Test STAR RSEM with workflow parameters (--skip_qc)
7m 48s
Test HISAT2 with workflow parameters (--hisat2_index false)
8m 19s
Test STAR Salmon with workflow parameters (--skip_qc)
8m 9s
Test STAR RSEM with workflow parameters (--rsem_index false)
10m 0s
Test STAR Salmon with workflow parameters (--skip_trimming)
10m 14s
Test STAR Salmon with workflow parameters (--gtf false)
10m 55s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_qc)
8m 2s
Test STAR Salmon with workflow parameters (--star_index false)
10m 54s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_alignment --skip_pse...
3m 41s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
10m 48s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --salmon_index false --tran...
10m 53s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_qc)
8m 21s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
9m 52s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_alignment --skip_p...
3m 25s
Test STAR Salmon with workflow parameters (--with_umi)
11m 56s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --kallisto_index false --...
11m 2s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
10m 57s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
18m 4s
Test STAR Salmon with workflow parameters (--bam_csi_index)
10m 38s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
11m 3s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
10m 55s
Test STAR Salmon with workflow parameters (--trimmer fastp)
9m 57s
4h 3m 34s