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Add NGSCheckMate #2061

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Add NGSCheckMate

Add NGSCheckMate #2061

Run time

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Job Run time
Run pipeline with test data (23.04.0)
11m 42s
Run pipeline with test data (latest-everything)
11m 29s
Test STAR Salmon with workflow parameters (--skip_qc)
8m 6s
Test HISAT2 with workflow parameters (--skip_qc)
6m 19s
Test STAR Salmon with workflow parameters (--skip_trimming)
10m 38s
Test HISAT2 with workflow parameters (--hisat2_index false)
8m 20s
Test STAR Salmon with workflow parameters (--gtf false)
13m 23s
Test STAR Salmon with workflow parameters (--star_index false)
11m 15s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
11m 25s
Test STAR RSEM with workflow parameters (--skip_qc)
7m 42s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
10m 4s
Test STAR RSEM with workflow parameters (--rsem_index false)
10m 3s
Test STAR Salmon with workflow parameters (--with_umi)
11m 21s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
11m 42s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
18m 13s
Test STAR Salmon with workflow parameters (--bam_csi_index)
10m 31s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
12m 54s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
12m 51s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_qc)
8m 23s
Test STAR Salmon with workflow parameters (--trimmer fastp)
10m 56s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_alignment --skip_pse...
3m 56s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --salmon_index false --tran...
10m 50s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_qc)
8m 36s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_alignment --skip_p...
3m 52s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --kallisto_index false --...
11m 48s
4h 16m 19s