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Add gtf2bed tests #2351

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Add gtf2bed tests

Add gtf2bed tests #2351

Run time

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Job Run time
Test STAR RSEM with workflow parameters (--skip_qc)
7m 36s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_qc)
8m 1s
Test STAR RSEM with workflow parameters (--rsem_index false)
9m 35s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_alignment --skip_pse...
3m 50s
Check for changes
5s
Test HISAT2 with workflow parameters (--skip_qc)
5m 43s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --salmon_index false --tran...
10m 18s
Test HISAT2 with workflow parameters (--hisat2_index false)
7m 59s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_qc)
7m 43s
Test STAR Salmon with workflow parameters (--skip_qc)
8m 2s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_alignment --skip_p...
4m 5s
Test STAR Salmon with workflow parameters (--skip_trimming)
10m 8s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --kallisto_index false --...
10m 39s
Test STAR Salmon with workflow parameters (--gtf false)
10m 14s
Test STAR Salmon with workflow parameters (--star_index false)
10m 18s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
10m 34s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
9m 37s
Test STAR Salmon with workflow parameters (--with_umi)
11m 4s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
11m 9s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
12m 37s
Test STAR Salmon with workflow parameters (--bam_csi_index)
9m 54s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
10m 11s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
10m 14s
Test STAR Salmon with workflow parameters (--trimmer fastp)
9m 53s
GTF2BED docker NF-23.04.0
54s
confirm-pass
1s
3h 30m 24s