Sarek bcftools normalization #6558
Triggered via pull request
December 4, 2024 06:47
Patricie34
Status
Cancelled
Total duration
8m 15s
Artifacts
–
Annotations
50 errors and 50 warnings
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Test function | docker | latest-everything | 2/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test function | docker | latest-everything | 2/5
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
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Test workflow | docker | latest-everything | 4/5
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
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Test workflow | docker | latest-everything | 4/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test pipeline | docker | latest-everything | 4/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test pipeline | docker | latest-everything | 4/5
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
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Test workflow | docker | latest-everything | 1/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test workflow | docker | latest-everything | 1/5
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
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Test pipeline | docker | latest-everything | 1/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test pipeline | docker | latest-everything | 1/5
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
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Test function | docker | latest-everything | 3/5
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
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Test function | docker | latest-everything | 3/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test workflow | docker | latest-everything | 5/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test workflow | docker | latest-everything | 5/5
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
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Test pipeline | docker | latest-everything | 5/5
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
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Test pipeline | docker | latest-everything | 5/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test function | docker | latest-everything | 5/5
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
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Test function | docker | latest-everything | 5/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test pipeline | docker | latest-everything | 3/5
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
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Test pipeline | docker | latest-everything | 3/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test function | docker | latest-everything | 1/5
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
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Test function | docker | latest-everything | 1/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test function | docker | latest-everything | 4/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test function | docker | latest-everything | 4/5
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
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Test pipeline | docker | latest-everything | 2/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test pipeline | docker | latest-everything | 2/5
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
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Test workflow | docker | latest-everything | 3/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test workflow | docker | latest-everything | 3/5
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
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Test workflow | docker | latest-everything | 2/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test workflow | docker | latest-everything | 2/5
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
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Test workflow | docker | 24.04.2 | 4/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test workflow | docker | 24.04.2 | 3/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test function | docker | 24.04.2 | 4/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test function | docker | 24.04.2 | 2/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test function | docker | 24.04.2 | 1/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test function | docker | 24.04.2 | 5/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test workflow | docker | 24.04.2 | 1/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test function | docker | 24.04.2 | 3/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test workflow | docker | 24.04.2 | 2/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test workflow | docker | 24.04.2 | 5/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Test pipeline | docker | 24.04.2 | 3/5
Canceling since a higher priority waiting request for 'nf-core CI-1682' exists
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Test pipeline | docker | 24.04.2 | 3/5
The operation was canceled.
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Test pipeline | docker | 24.04.2 | 2/5
Canceling since a higher priority waiting request for 'nf-core CI-1682' exists
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Test pipeline | docker | 24.04.2 | 2/5
The operation was canceled.
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Test pipeline | docker | 24.04.2 | 4/5
Canceling since a higher priority waiting request for 'nf-core CI-1682' exists
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Test pipeline | docker | 24.04.2 | 4/5
The operation was canceled.
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Test pipeline | docker | 24.04.2 | 1/5
Canceling since a higher priority waiting request for 'nf-core CI-1682' exists
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Test pipeline | docker | 24.04.2 | 1/5
The operation was canceled.
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Test pipeline | docker | 24.04.2 | 5/5
Canceling since a higher priority waiting request for 'nf-core CI-1682' exists
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Test pipeline | docker | 24.04.2 | 5/5
The operation was canceled.
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Test function | docker | latest-everything | 2/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Test function | docker | latest-everything | 2/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Test workflow | docker | latest-everything | 4/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Test workflow | docker | latest-everything | 4/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Test pipeline | docker | latest-everything | 4/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Test pipeline | docker | latest-everything | 4/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Test workflow | docker | latest-everything | 1/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Test workflow | docker | latest-everything | 1/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Test pipeline | docker | latest-everything | 1/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Test pipeline | docker | latest-everything | 1/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Test function | docker | latest-everything | 3/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Test function | docker | latest-everything | 3/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Test workflow | docker | latest-everything | 5/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Test workflow | docker | latest-everything | 5/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Test pipeline | docker | latest-everything | 5/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
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Test pipeline | docker | latest-everything | 5/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Test function | docker | latest-everything | 5/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Test function | docker | latest-everything | 5/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Test pipeline | docker | latest-everything | 3/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
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Test pipeline | docker | latest-everything | 3/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Test function | docker | latest-everything | 1/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Test function | docker | latest-everything | 1/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Test function | docker | latest-everything | 4/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Test function | docker | latest-everything | 4/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
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Test pipeline | docker | latest-everything | 2/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Test pipeline | docker | latest-everything | 2/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
Test workflow | docker | latest-everything | 3/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Test workflow | docker | latest-everything | 3/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
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Test workflow | docker | latest-everything | 2/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Test workflow | docker | latest-everything | 2/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Test workflow | docker | 24.04.2 | 4/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Test workflow | docker | 24.04.2 | 4/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
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Test workflow | docker | 24.04.2 | 3/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Test workflow | docker | 24.04.2 | 3/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
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Test function | docker | 24.04.2 | 4/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Test function | docker | 24.04.2 | 4/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
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Test function | docker | 24.04.2 | 2/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Test function | docker | 24.04.2 | 2/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
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Test function | docker | 24.04.2 | 1/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
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Test function | docker | 24.04.2 | 1/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
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Test function | docker | 24.04.2 | 5/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Test function | docker | 24.04.2 | 5/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
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Test workflow | docker | 24.04.2 | 1/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Test workflow | docker | 24.04.2 | 1/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
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Test function | docker | 24.04.2 | 3/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Test function | docker | 24.04.2 | 3/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
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Test workflow | docker | 24.04.2 | 2/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Test workflow | docker | 24.04.2 | 2/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|
|
Test workflow | docker | 24.04.2 | 5/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Test workflow | docker | 24.04.2 | 5/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
|