Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon_haplotyper_skip_filter --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:50:24 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:51:51 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 09:52:57 GMT+0000 (Coordinated Universal Time)

sentieon_dnascope_skip_filter docker NF latest-everything

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon_dnascope_skip_filter --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:50:25 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:51:56 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 09:53:05 GMT+0000 (Coordinated Universal Time)

sentieon_dnascope_skip_filter docker NF 23.04.0

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon_dnascope_skip_filter --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:50:20 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:51:52 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 09:53:07 GMT+0000 (Coordinated Universal Time)

save_mapped_only docker NF latest-everything

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag save_mapped_only --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:50:23 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:52:05 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 09:53:22 GMT+0000 (Coordinated Universal Time)

sentieon_haplotyper_skip_filter docker NF 23.04.0

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon_haplotyper_skip_filter --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:50:32 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:52:04 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 09:53:20 GMT+0000 (Coordinated Universal Time)

save_mapped_only docker NF 23.04.0

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag save_mapped_only --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:50:25 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:52:09 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 09:53:27 GMT+0000 (Coordinated Universal Time)

save_output_as_bam_only docker NF 23.04.0

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag save_output_as_bam_only --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:50:28 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:52:32 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 09:53:52 GMT+0000 (Coordinated Universal Time)

save_output_as_bam_only docker NF latest-everything

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag save_output_as_bam_only --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:50:21 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:52:27 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 09:53:55 GMT+0000 (Coordinated Universal Time)

sentieon/dnascope docker NF 23.04.0

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon/dnascope --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:50:21 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:53:05 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 09:55:33 GMT+0000 (Coordinated Universal Time)

sentieon/dnascope docker NF latest-everything

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon/dnascope --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:50:25 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:53:18 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 09:55:41 GMT+0000 (Coordinated Universal Time)

sentieon/bwamem docker NF latest-everything

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon/bwamem --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:50:38 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:54:02 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 09:56:45 GMT+0000 (Coordinated Universal Time)

sentieon/bwamem docker NF 23.04.0

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon/bwamem --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:50:21 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:53:44 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 09:56:41 GMT+0000 (Coordinated Universal Time)

sentieon/haplotyper docker NF latest-everything

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon/haplotyper --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:50:24 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:55:45 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 10:00:47 GMT+0000 (Coordinated Universal Time)

gatk4spark docker NF 23.04.0

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag gatk4spark --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:50:27 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:55:56 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 10:00:20 GMT+0000 (Coordinated Universal Time)

gatk4spark docker NF latest-everything

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag gatk4spark --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:50:36 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:56:13 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 10:00:39 GMT+0000 (Coordinated Universal Time)

sentieon/haplotyper docker NF 23.04.0

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon/haplotyper --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:50:36 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:56:24 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 10:01:52 GMT+0000 (Coordinated Universal Time)

skip_markduplicates docker NF 23.04.0

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag skip_markduplicates --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:50:22 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:56:25 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 10:01:48 GMT+0000 (Coordinated Universal Time)

skip_markduplicates docker NF latest-everything

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag skip_markduplicates --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 09:50:30 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 09:56:29 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 10:01:42 GMT+0000 (Coordinated Universal Time)

confirm-pass

Process completed with exit code 1.

sentieon_haplotyper_skip_filter docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

sentieon_dnascope_skip_filter docker NF latest-everything