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nf-core · Oct 25, 2024 · 04b961f · 04b961f
1 parent 2fbb8fa
commit 04b961f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/subworkflows/local/bam_variant_calling_somatic_tiddit/main.nf b/subworkflows/local/bam_variant_calling_somatic_tiddit/main.nf
@@ -22,7 +22,7 @@ workflow BAM_VARIANT_CALLING_SOMATIC_TIDDIT {
     TIDDIT_NORMAL(cram_normal, fasta, bwa)
     TIDDIT_TUMOR(cram_tumor, fasta, bwa)
 
-    SVDB_MERGE(TIDDIT_NORMAL.out.vcf.join(TIDDIT_TUMOR.out.vcf, failOnDuplicate: true, failOnMismatch: true).map{ meta, vcf_normal, vcf_tumor -> [ meta, [vcf_normal, vcf_tumor] ] }, false)
+    SVDB_MERGE(TIDDIT_NORMAL.out.vcf.join(TIDDIT_TUMOR.out.vcf, failOnDuplicate: true, failOnMismatch: true).map{ meta, vcf_normal, vcf_tumor -> [ meta, [vcf_normal, vcf_tumor] ] }, false, true)
 
     vcf = SVDB_MERGE.out.vcf