fix output

nf-core · Oct 27, 2024 · 36110c3 · 36110c3
1 parent dc30629
commit 36110c3
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/conf/modules/tiddit.config b/conf/modules/tiddit.config
@@ -47,6 +47,7 @@ process {
 
         // SVDB
         withName: 'NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TIDDIT:SVDB_MERGE' {
+            ext.args2  = { '--output-type z' }
             ext.prefix = { "${meta.id}.tiddit_sv_merge" }
             publishDir = [
                 mode: params.publish_dir_mode,