FIX: add setup java 17 (#1743)

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## PR checklist

- [ ] This comment contains a description of changes (with reason).
- [ ] If you've fixed a bug or added code that should be tested, add
tests!
- [ ] If you've added a new tool - have you followed the pipeline
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.github/workflows/ci.yml

@@ -57,6 +57,11 @@ jobs:
           python-version: "3.11"
           architecture: "x64"
 
+      - uses: actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b # v4
+        with:
+          distribution: "temurin"
+          java-version: "17"
+
       - name: Set up Nextflow
         uses: nf-core/setup-nextflow@v2
         with:

.github/workflows/pytest.yml

@@ -87,6 +87,11 @@ jobs:
       - name: Install Python dependencies
         run: pip install --upgrade -r tests/requirements.txt
 
+      - uses: actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b # v4
+        with:
+          distribution: "temurin"
+          java-version: "17"
+
       - name: Install Nextflow ${{ matrix.NXF_VER }}
         uses: nf-core/setup-nextflow@v2
         with:

CHANGELOG.md

@@ -42,6 +42,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [1695](https://github.com/nf-core/sarek/pull/1695) - Fix and update input_schema.json
 - [1702](https://github.com/nf-core/sarek/pull/1702) - Update nf-schema tests that were not failing on lenient mode
 - [1712](https://github.com/nf-core/sarek/pull/1712) - Fix missing import statements on error messages when starting without samplesheet
+- [1743](https://github.com/nf-core/sarek/pull/1743) - Add setup java 17 in GHA for latest Nextflow version
 
 ### Removed