Apply suggestions from code review

nf-core · Nov 27, 2024 · af736b4 · af736b4
1 parent 817847c
commit af736b4
Showing 1 changed file with 0 additions and 9 deletions.
diff --git a/tests/test_normalize_vcfs.yml b/tests/test_normalize_vcfs.yml
@@ -5,15 +5,6 @@
   files:
     - path: results/variant_calling/normalized/testN/testN.norm.vcf.gz
       # binary changes md5sums on reruns
-      contains:
-        [
-          "SOURCE=testN.deepvariant.vcf.gz",
-          "AB=0.167832;ABP=277.102;AC=1;AF=0.5;AN=2;AO=48;CIGAR=1X;DP=286;DPB=286;DPRA=0;EPP=3.0103;EPPR=3.0103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=105.855;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2017;QR=9863;RO=238;RPL=0;RPP=107.241;RPPR=519.821;RPR=48;RUN=1;SAF=24;SAP=3.0103;SAR=24;SRF=119;SRP=3.0103;SRR=119;TYPE=snp;technology.illumina=1;",
-          "SOURCE=testN.freebayes.vcf.gz",
-          "SNVHPOL=7;MQ=60;",
-          "SOURCE=testN.strelka.variants.vcf.gz",
-          "SOURCE=testN.bcftools.vcf.gz",
-        ]
     - path: results/variant_calling/normalized/testT/testT.norm.vcf.gz
     # binary changes md5sums on reruns
     - path: results/variant_calling/normalized/testN/testN.norm.vcf.gz.tbi