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update CHANGELOG
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maxulysse committed Oct 9, 2024
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19 changes: 14 additions & 5 deletions CHANGELOG.md
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Expand Up @@ -18,16 +18,19 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
### Changed

- [1669](https://github.com/nf-core/sarek/pull/1669) - Better nf-test pipeline level tests
- [1680](https://github.com/nf-core/sarek/pull/1680) - Template update for nf-core/tools v3.0.0
- [1681](https://github.com/nf-core/sarek/pull/1681) - Template update for nf-core/tools v3.0.1

### Fixed

- [1656](https://github.com/nf-core/sarek/pull/1656) - Retiring parameter `snpeff_genome`
- [1657](https://github.com/nf-core/sarek/pull/1657) - Update all actions used in the GHA CI
- [1661](https://github.com/nf-core/sarek/pull/1661) - nf-test pipeline level tests
- [1673](https://github.com/nf-core/sarek/pull/1673) - Print warning message instead of silent error with Nextflow versions prior to 24.08.0edge

### Removed

- [1656](https://github.com/nf-core/sarek/pull/1656) - Retiring parameter `snpeff_genome`

### Dependencies

| Dependency | Old version | New version |
Expand All @@ -42,10 +45,16 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### Parameters

| Params | Status |
| --------------- | ------- |
| `snpeff_db` | Updated |
| `snpeff_genome` | Removed |
| Params | Status |
| ------------------------------------ | ------- |
| `--help_full` | New |
| `--show_hidden` | New |
| `--snpeff_db` | Updated |
| `--snpeff_genome` | Removed |
| `--validationFailUnrecognisedParams` | Removed |
| `--validationLenientMode` | Removed |
| `--validationSchemaIgnoreParams` | Removed |
| `--validationShowHiddenParams` | Removed |

## [3.4.4](https://github.com/nf-core/sarek/releases/tag/3.4.4) - Ruopsokjåkhå

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