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Add nf-test sharding CI#1668

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maxulysse merged 61 commits intodevnf-core/sarek:devfrom fresh-nf-testnf-core/sarek:fresh-nf-testCopy head branch name to clipboardOct 28, 2024

+416-340

Commits

Commits on Oct 1, 2024

• ci: Copy over from methylseq

  edmundmiller

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  6839ad2

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• ci: Move Sarek specific settings to ci

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• ci: tap => xml

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• build: Add triggers

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• ci: Add clean up

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• ci: Give jobs a name

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Commits on Oct 2, 2024

• ci: job-total => 5

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• ci: Follow dependencies

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• ci: Wondering if we can combine proccesses and functions

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• test: Manually nump software versions txt

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• ci: Run processes and functions seperately

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• ci(#1672): Remove latest-everything

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Commits on Oct 4, 2024

• Merge branch 'dev' into fresh-nf-test

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• Update .github/workflows/ci.yml

  maxulysse

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• Update .github/nf-test-tags.yml

  maxulysse

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• no need for tags

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• just 1 shard for pipeline as we have just 1 test currently

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• just 1 shard for pipeline as we have just 1 test currently

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• just 1 shard for pipeline as we have just 1 test currently

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• fix samplesheet_to_channel test

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• update all modules/subworkflows

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• update nf-core/utils_nfcore_pipeline subworkflow

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• update nf-core/utils_nfvalidation_plugin subworkflow

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Commits on Oct 7, 2024

• Merge branch 'dev' into fresh-nf-test

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• 4 shards for pipeline

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• Merge branch 'dev' into fresh-nf-test

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Commits on Oct 8, 2024

• Merge branch 'nft-utils-0-0-3' into fresh-nf-test

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• no need to exclude pipeline shards anymore

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Commits on Oct 11, 2024

• Merge branch 'dev' into fresh-nf-test

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• remove filter process for now

  maxulysse

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• bump minimum NXF_VER

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• no status is 0

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Commits on Oct 15, 2024

• Merge branch 'dev' into fresh-nf-test

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Commits on Oct 23, 2024

• Merge branch 'dev' into fresh-nf-test

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Commits on Oct 24, 2024

• Merge branch 'dev' into fresh-nf-test

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• Merge branch 'fresh-nf-test' of github.com:nf-core/sarek into fresh-nf-test

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• print tests run

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• Typo

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• echo the results

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• print to GITHUB_OUTPUT

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• print to GITHUB_SUMMARY

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• Better summary

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• Better summary

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• Better summary

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• update to python v5

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• nicer summary

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• escape single quote

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• polish

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• try concatenate reports

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• fix path

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• add needs

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• update actions

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• update action

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• update path

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• update path

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• update path

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• update path

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• revert to v3

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Commits on Oct 25, 2024

• revert to a working state

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Commits on Oct 28, 2024

• Merge branch 'dev' into fresh-nf-test

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• Apply suggestions from code review

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