Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fix test string #1754

Merged
merged 2 commits into from
Dec 11, 2024
+5 −1
Merged

Fix test string #1754

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
30da336
fix test string
FriederikeHanssen Dec 11, 2024
85b2de1
update changelog
FriederikeHanssen Dec 11, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions CHANGELOG.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -53,6 +53,7 @@ A set of connecting glaciers.
- [1745](https://github.com/nf-core/sarek/pull/1745) - Fix bug where workflow can hang if the email parameter is set
- [1746](https://github.com/nf-core/sarek/pull/1746) - Fix Sentieon module inputs
- [1752](https://github.com/nf-core/sarek/pull/1752) - Add `indexcov` and `lofreq` to full size tests. Amend overview figures.
- [1754](https://github.com/nf-core/sarek/pull/1754) - Fix test string

### Removed

Expand Down
5 changes: 4 additions & 1 deletion tests/test_fastp.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -78,7 +78,10 @@
- path: results/reports/fastp/test
- path: results/reports/fastqc/test-test_L1
- path: results/reports/markduplicates/test/test.md.cram.metrics
contains: ["test 17482 890 170 1047682 12552 69 0 0.65881"]
contains:
[
"LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED SECONDARY_OR_SUPPLEMENTARY_RDS UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE",
]
- path: results/reports/mosdepth/test/test.md.mosdepth.global.dist.txt
- path: results/reports/mosdepth/test/test.md.mosdepth.region.dist.txt
- path: results/reports/mosdepth/test/test.md.mosdepth.summary.txt
Expand Down
Loading