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Remove defaults channel from local modules #1755

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merged 2 commits into from
Dec 11, 2024
Merged

Remove defaults channel from local modules #1755

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ecda5a0
Remove channel and name from local modules
FriederikeHanssen Dec 11, 2024
bee1722
Remove channel and name from local modules
FriederikeHanssen Dec 11, 2024
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Original file line number Diff line number Diff line change
Expand Up @@ -54,6 +54,7 @@ A set of connecting glaciers.
- [1746](https://github.com/nf-core/sarek/pull/1746) - Fix Sentieon module inputs
- [1752](https://github.com/nf-core/sarek/pull/1752) - Add `indexcov` and `lofreq` to full size tests. Amend overview figures.
- [1754](https://github.com/nf-core/sarek/pull/1754) - Fix test string
- [1755](https://github.com/nf-core/sarek/pull/1755) - Remove `default` channel and name from local modules

### Removed

Expand All @@ -69,6 +70,7 @@ A set of connecting glaciers.
| `deepvariant` | 1.5.0 | 1.6.1 |
| `ensemblvep` | 111.0 | 113.0 |
| `fgbio` | 2.0.2 | 2.1.2 |
| `gawk` | 5.1.0 | 5.3.0 |
| `htslib` | 1.20 | 1.21 |
| `lofreq` | | 2.1.5 |
| `multiqc` | 1.21 | 1.25.1 |
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4 changes: 1 addition & 3 deletions modules/local/add_info_to_vcf/environment.yml
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@@ -1,7 +1,5 @@
name: gawk
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- anaconda::gawk=5.1.0
- conda-forge::gawk=5.3.0
4 changes: 1 addition & 3 deletions modules/local/create_intervals_bed/environment.yml
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Original file line number Diff line number Diff line change
@@ -1,7 +1,5 @@
name: gawk
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- anaconda::gawk=5.1.0
- conda-forge::gawk=5.3.0
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