nf-core · JustBioinfo · Nov 22, 2024
diff --git a/testdata-trim/CPrimers.fasta b/testdata-trim/CPrimers.fasta
@@ -0,0 +1,2 @@
+>Calpha
+GCGAYGACCACGTTCCCATCT
diff --git a/testdata-trim/Sample1_R1.fastq.gz b/testdata-trim/Sample1_R1.fastq.gz
diff --git a/testdata-trim/Sample1_R2.fastq.gz b/testdata-trim/Sample1_R2.fastq.gz
diff --git a/testdata-trim/linker.fasta b/testdata-trim/linker.fasta
@@ -0,0 +1,4 @@
+>race_linker_1
+GGGG
+>race_linker_2
+AAAAGGGG
diff --git a/testdata-trim/samplesheet.tsv b/testdata-trim/samplesheet.tsv
@@ -0,0 +1,2 @@
+sample_id	filename_R1	filename_R2	subject_id	species	pcr_target_locus	treatment	tissue
+Sample1	https://raw.githubusercontent.com/nf-core/test-datasets/airrflow/testdata-trim/Sample1_R1.fastq.gz	https://raw.githubusercontent.com/nf-core/test-datasets/airrflow/testdata-trim/Sample1_R2.fastq.gz	Sample1	mouse	IG	treatment	blood
diff --git a/testdata-trim/umi_pattern.fasta b/testdata-trim/umi_pattern.fasta
@@ -0,0 +1,4 @@
+>umi-linker1
+NNNNTNNNNTNNNNTCTTGGGG
+>umi-linker2
+NNNNTNNNNTNNNNTCTTAAAAGGGG
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		sample_id filename_R1 filename_R2 subject_id species pcr_target_locus treatment tissue
		Sample1 https://raw.githubusercontent.com/nf-core/test-datasets/airrflow/testdata-trim/Sample1_R1.fastq.gz https://raw.githubusercontent.com/nf-core/test-datasets/airrflow/testdata-trim/Sample1_R2.fastq.gz Sample1 mouse IG treatment blood